CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THET2 (Octanoyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lipB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFD---LKDPPFQVYRTERGGEVTYHGPGQLVMYPI 665
            LVPY EAW++QK + +E  A      + P TL++L+H  V T+G   + E L F     ++  F++Y  ERGG+VTYHGPGQLV YPI
Sbjct:   10 LVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPI 92          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_GEOSM (Octanoyltransferase OS=Geobacter sp. (strain M21) GN=lipB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            ++ Y EA   Q+ +V    A +++  +  + L++L+H PVYT+G GGS +    ++ DP  +  R  RGG+VTYHGPGQLV YPI++L     DLH
Sbjct:    8 VIGYAEALRIQEQLV----AKVQQGGE--EALLLLEHLPVYTIGAGGSRD----NVLDPELEPVRVNRGGDVTYHGPGQLVCYPILDLSRRGRDLH 93          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_BACFR (Octanoyltransferase OS=Bacteroides fragilis GN=lipB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  408 ELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNF---DLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            EL+PY+EAWS Q           +  E   + +I  +H  VYT+G  G E  +      LK     +Y  +RGG++TYHGPGQLV YPI+NL    + L
Sbjct:    9 ELIPYSEAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPILNLEEFGLGL 107          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_BACFN (Octanoyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=lipB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  408 ELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNF---DLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            EL+PY+EAWS Q           +  E   + +I  +H  VYT+G  G E  +      LK     +Y  +RGG++TYHGPGQLV YPI+NL    + L
Sbjct:    9 ELIPYSEAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPILNLEEFGLGL 107          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PELCD (Octanoyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=lipB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            ++PY EA++ Q+ +V++  A        P+TL++++H PVYT+G  G  E    +L D   +V    RGG++TYH PGQLV YP++NL     DL
Sbjct:    8 VMPYAEAYALQEQLVRDIAA-----GSAPETLLLVEHPPVYTLGRSGHME----NLLDDSIEVVSINRGGDITYHAPGQLVGYPLLNLGLRGRDL 93          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_GEOBB (Octanoyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=lipB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            ++ Y EA   Q+ +V E +      +   + L++L+H PVYT+G GG       ++ DP  +  R  RGG+VTYHGPGQLV YPI++L     DLH
Sbjct:    8 VIGYAEALRIQEQLVAEVQ------QGGEEALLLLEHLPVYTIGAGGDRG----NVLDPELEPVRVNRGGDVTYHGPGQLVCYPILDLSRRGRDLH 93          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROM9 (Octanoyltransferase OS=Prochlorococcus marinus (strain MIT 9312) GN=lipB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +N+ +  QK     ++ALI  N + PD + + +H   YT+G G + + L F L D  + V++ +RGGEVT H PGQLV Y I++L+N   DL+W
Sbjct:   17 FNDVYKLQKEY---QEALILDNSN-PDFIWIGEHQLCYTLGRGSNYDNLLFSLNDEKYDVFKIDRGGEVTCHMPGQLVTYLILDLKNFNKDLNW 106          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THICR (Octanoyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  402 YKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            Y  L PY   W   +    E      R E  PD L V++H PV+T G  G  ++L     +    + +T+RGG+VTYHGPGQ+++Y +++L+  ++
Sbjct:    7 YLGLQPYESTWEAMQRFTNE------RTEHTPDELWVVEHPPVFTQGLNGQAKHLQAFALEQNIPIIQTDRGGQVTYHGPGQIIIYVLLDLKRAQL 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_NITMU (Octanoyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 3
Query:  402 YKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            Y  ++ Y   W   K           R ++ PD + +LQH PVYT G  G  E+L   L +P   V RT+RGG++TYHGPGQ++ Y ++++R  K+
Sbjct:   20 YAAVMDYLSIWQAMKAFTAS------RTQNTPDEIWLLQHWPVYTQGVAGKPEHL---LCNPGIPVVRTDRGGQITYHGPGQIIAYLLLDMRRLKL 106          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_HALHL (Octanoyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  417 PYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLR 677
            PY   W+  +   +E      R+ +  D L +LQH PVYT+G  G  E++  D  + P  V  T+RGG+VT+HGPGQLV YP+++LR
Sbjct:   17 PYEPTWTAMRTFTEE------RSSETRDELWLLQHPPVYTLGQAGRPEHI-LDTGETP--VVHTDRGGQVTWHGPGQLVAYPLLDLR 94          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_THET22.375e-1346.59Octanoyltransferase OS=Thermus thermophilus (strai... [more]
LIPB_GEOSM2.375e-1341.67Octanoyltransferase OS=Geobacter sp. (strain M21) ... [more]
LIPB_BACFR5.290e-1339.39Octanoyltransferase OS=Bacteroides fragilis GN=lip... [more]
LIPB_BACFN5.290e-1339.39Octanoyltransferase OS=Bacteroides fragilis (strai... [more]
LIPB_PELCD6.910e-1340.00Octanoyltransferase OS=Pelobacter carbinolicus (st... [more]
LIPB_GEOBB9.024e-1340.63Octanoyltransferase OS=Geobacter bemidjiensis (str... [more]
LIPB_PROM91.179e-1240.43Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_THICR2.010e-1234.38Octanoyltransferase OS=Thiomicrospira crunogena (s... [more]
LIPB_NITMU2.010e-1237.50Octanoyltransferase OS=Nitrosospira multiformis (s... [more]
LIPB_HALHL2.010e-1242.53Octanoyltransferase OS=Halorhodospira halophila (s... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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