CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_ACTSZ (Octanoyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHK 686
            YN+ W   ++   +      RNE+ PD + ++QH PV+T G  G  E+L   L      V R++RGG++TYHGPGQ +MY +I+++  K
Sbjct:   15 YNQVWRQMQDFTDQ------RNENTPDEIWLVQHPPVFTQGQAGKPEHL---LNPGAIPVVRSDRGGQITYHGPGQQIMYVLIDIKRGK 94          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_VIBVY (Octanoyltransferase OS=Vibrio vulnificus (strain YJ016) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RNE+ PD + +++H+PV+T G  G  E+L   L      V +++RGG+VTYHGPGQLV Y +INLR  K+
Sbjct:   29 RNEETPDEVWLVEHNPVFTQGQAGKAEHL---LNTGDIPVVQSDRGGQVTYHGPGQLVAYFLINLRRKKL 95          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_VIBVU (Octanoyltransferase OS=Vibrio vulnificus GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RNE+ PD + +++H+PV+T G  G  E+L   L      V +++RGG+VTYHGPGQLV Y +INLR  K+
Sbjct:   29 RNEETPDEVWLVEHNPVFTQGQAGKAEHL---LNTGDIPVVQSDRGGQVTYHGPGQLVAYFLINLRRKKL 95          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHESR (Octanoyltransferase OS=Shewanella sp. (strain MR-7) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RN D PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+++++  K+
Sbjct:   30 RNSDSPDELWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVVYPLLDIKRSKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHESM (Octanoyltransferase OS=Shewanella sp. (strain MR-4) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RN D PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+++++  K+
Sbjct:   30 RNSDSPDELWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVVYPLLDIKRSKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHESA (Octanoyltransferase OS=Shewanella sp. (strain ANA-3) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RN D PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+++++  K+
Sbjct:   30 RNSDSPDELWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVVYPLLDIKRSKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHEON (Octanoyltransferase OS=Shewanella oneidensis GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RN D PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+++++  K+
Sbjct:   32 RNNDSPDELWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVVYPLLDIKRSKI 98          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROMS (Octanoyltransferase OS=Prochlorococcus marinus (strain AS9601) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +N+ +  QK     + ALI  N + PD + + +H   YT+G G + + L F L D  + V++ +RGGEVT H PGQLV Y +++L+N   DL+W
Sbjct:   17 FNDVYKLQKEY---QDALILDNSN-PDFIWIGEHQLCYTLGRGSNYDNLLFSLNDAKYDVFKIDRGGEVTCHMPGQLVTYLVLDLKNFNKDLNW 106          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_NITEC (Octanoyltransferase OS=Nitrosomonas eutropha (strain C91) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            +  Y  AW   K+  ++      R  + PD + +L+H PVYT G  G  E+L F    P   V +T+RGG++TYHGPGQ++MY +++L   ++ +
Sbjct:   25 ITEYLTAWQAMKDFTQQ------RTRETPDEIWLLEHPPVYTQGIAGKPEHLLFPSNIP---VIKTDRGGQITYHGPGQIIMYLLLDLHRWQLGI 110          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_GRAFK (Octanoyltransferase OS=Gramella forsetii (strain KT0803) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNE----DCP--DTLIVLQHSPVYTMGTGGSEEYLNF---DLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            Y E W +Q+NI KE   L  +N     + P  +  + ++H  VYT+G  G  E L     +LK      Y+  RGG++TYHGPGQ+V YPI++L N   D+H
Sbjct:   15 YKETWDYQENIFKETVDLKIKNRREGTEIPTRNYFLFVEHPHVYTLGKSGDAENLLISEKELKAKNATFYKINRGGDITYHGPGQIVGYPILDLDNFFTDIH 116          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_ACTSZ2.010e-1238.20Octanoyltransferase OS=Actinobacillus succinogenes... [more]
LIPB_VIBVY2.626e-1248.57Octanoyltransferase OS=Vibrio vulnificus (strain Y... [more]
LIPB_VIBVU2.626e-1248.57Octanoyltransferase OS=Vibrio vulnificus GN=lipB P... [more]
LIPB_SHESR2.626e-1244.29Octanoyltransferase OS=Shewanella sp. (strain MR-7... [more]
LIPB_SHESM2.626e-1244.29Octanoyltransferase OS=Shewanella sp. (strain MR-4... [more]
LIPB_SHESA2.626e-1244.29Octanoyltransferase OS=Shewanella sp. (strain ANA-... [more]
LIPB_SHEON2.626e-1244.29Octanoyltransferase OS=Shewanella oneidensis GN=li... [more]
LIPB_PROMS2.626e-1239.36Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_NITEC2.626e-1235.79Octanoyltransferase OS=Nitrosomonas eutropha (stra... [more]
LIPB_GRAFK2.626e-1239.22Octanoyltransferase OS=Gramella forsetii (strain K... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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