CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_AERS4 (Octanoyltransferase OS=Aeromonas salmonicida (strain A449) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 3
Query:  417 PYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            PY   W   K           R  D PD   V++H PVYT G  G  E+L   L      V +++RGG+VTYHGPGQLV+Y ++++R  K+ +
Sbjct:   20 PYQPVWDAMKAFTDN------RTSDTPDEFWVVEHDPVYTQGQAGKAEHL---LAPGDIPVVQSDRGGQVTYHGPGQLVLYVLVDVRRSKLSV 103          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_DESPS (Octanoyltransferase OS=Desulfotalea psychrophila GN=lipB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  498 DTLIVLQHSPVYTMGTGGSEEYLNFD---LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            D  ++ +H PVYT+G  G E++L+     L      V   ERGGE+TYHGPGQLV+YPI++LR  KM
Sbjct:   34 DCFLLTEHPPVYTLGKRGGEQHLHISKEMLAQKGIDVVSIERGGEITYHGPGQLVLYPILHLRKRKM 100          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_CYTH3 (Octanoyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=lipB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNI----VKEKKALIERNED---CPDT-LIVLQHSPVYTMGTGGSEEYL---NFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            L+ Y +AW +Q  +    +++K AL +  ED    P   LI  +H  VYT+G  G  E+L      L+      Y   RGG++TYHGPGQLV YPI +L N   D+H
Sbjct:   16 LIDYQQAWDYQTQLFNSTIEKKLALRDLPEDEQVAPGNFLIFCEHPHVYTLGKSGKREHLLISEAQLQHAQAAYYEINRGGDITYHGPGQLVGYPIFDLDNFFTDIH 122          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THETN (Octanoyltransferase OS=Thermoanaerobacter tengcongensis GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMG-TGGSEE--YLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            +VPY E    Q    ++ K      E+    LI+LQH PVYT+G +GG +E   +  D      ++Y+ ERGG++T+HGPGQ+V YPI NL   + D+H
Sbjct:   11 VVPYLEGKEIQLKAFEKVK-----KEETDGILILLQHKPVYTIGVSGGYDEDILVPIDYIKEKAELYKVERGGKITFHGPGQVVAYPIFNLAKWQKDVH 104          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THEFY (Octanoyltransferase OS=Thermobifida fusca (strain YX) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  414 VPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMG--TGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINL 674
            VPY E W  Q+ + K + A     +  PDT+++L+H PVYT G  TG  +      L DP   V   +RGG++T+HGPGQL  YPI+ L
Sbjct:   17 VPYMEGWELQRQLHKRRVA-----DQVPDTVLLLEHEPVYTAGKRTGPWDR----PLTDPGAPVIDIDRGGKITWHGPGQLTAYPIVKL 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROM2 (Octanoyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +N+ +  QK     +++LI  N + PD + + +H   YT+G G + + L F L D  + V++ +RGGEVT H PGQLV Y +++L+N   DL+W
Sbjct:   17 FNDVYKLQKEY---QESLILDNSN-PDFIWIGEHQLCYTLGRGSNYDNLLFSLNDDNYDVFKIDRGGEVTCHMPGQLVTYLVLDLKNFNKDLNW 106          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_NITEU (Octanoyltransferase OS=Nitrosomonas europaea GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            Y  AW   KN   ++        + PD + +L+H PVYT G  G  E+L F  + P   V +T+RGG++TYHGPGQ+++Y +++L   ++++
Sbjct:   14 YLTAWQAMKNFTAQRTC------ETPDEIWLLEHPPVYTQGIAGKPEHLLFPNQIP---VIKTDRGGQITYHGPGQIILYLLLDLHRWRLNI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_CORGL (Octanoyltransferase OS=Corynebacterium glutamicum GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINL 674
            L+ Y EAW +Q  +   +      N++ PD L++L+H  VYT G     E    DL      V   +RGG +T+HGPGQLV+YPII L
Sbjct:   29 LIDYQEAWDYQAELATRRA-----NDEIPDQLLILEHPSVYTAGKRTQPE----DLPTNGLPVINADRGGRITWHGPGQLVIYPIIKL 107          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_CORGB (Octanoyltransferase OS=Corynebacterium glutamicum (strain R) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINL 674
            L+ Y EAW +Q  +   +      N++ PD L++L+H  VYT G     E    DL      V   +RGG +T+HGPGQLV+YPII L
Sbjct:   29 LIDYQEAWDYQAELATRRA-----NDEIPDQLLILEHPSVYTAGKRTQPE----DLPTNGLPVINADRGGRITWHGPGQLVIYPIIKL 107          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_AERHH (Octanoyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 3
Query:  417 PYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            PY   W   K           R  D PD   V++H PVYT G  G  E+L   L      V +++RGG+VTYHGPGQLV+Y ++++R  K+
Sbjct:   25 PYQPVWDAMKAFTDS------RTPDTPDEFWVVEHDPVYTQGQAGKAEHL---LAPGDIPVVQSDRGGQVTYHGPGQLVLYVLVDVRRSKL 106          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_AERS42.626e-1238.71Octanoyltransferase OS=Aeromonas salmonicida (stra... [more]
LIPB_DESPS3.429e-1249.25Octanoyltransferase OS=Desulfotalea psychrophila G... [more]
LIPB_CYTH33.429e-1239.25Octanoyltransferase OS=Cytophaga hutchinsonii (str... [more]
LIPB_THETN4.479e-1240.40Octanoyltransferase OS=Thermoanaerobacter tengcong... [more]
LIPB_THEFY4.479e-1242.70Octanoyltransferase OS=Thermobifida fusca (strain ... [more]
LIPB_PROM24.479e-1238.30Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_NITEU4.479e-1235.87Octanoyltransferase OS=Nitrosomonas europaea GN=li... [more]
LIPB_CORGL4.479e-1240.91Octanoyltransferase OS=Corynebacterium glutamicum ... [more]
LIPB_CORGB4.479e-1240.91Octanoyltransferase OS=Corynebacterium glutamicum ... [more]
LIPB_AERHH4.479e-1239.56Octanoyltransferase OS=Aeromonas hydrophila subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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