CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHESW (Octanoyltransferase OS=Shewanella sp. (strain W3-18-1) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RN + PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+I+++  K+
Sbjct:   30 RNSESPDELWIVEHPPVFTQGQAGKSEHI---LNAGDIPVIQVDRGGQVTYHGPGQLVVYPLIDIKRSKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHEPC (Octanoyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            RN + PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+I+++  K+
Sbjct:   32 RNSESPDELWIVEHPPVFTQGQAGKSEHI---LNAGDIPVIQVDRGGQVTYHGPGQLVVYPLIDIKRSKI 98          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_PROM0 (Octanoyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=lipB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +++ +  QK     ++ALI  N + PD + + +H   YT+G G + + L F L D  + V++ +RGGEVT H PGQLV Y +++L+N   DL+W
Sbjct:   17 FHDVYKLQKEY---QEALILDNSN-PDFIWIGEHQLCYTLGRGSNYDNLLFSLNDAKYDVFKIDRGGEVTCHMPGQLVTYLVLDLKNFNKDLNW 106          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_BACTN (Octanoyltransferase OS=Bacteroides thetaiotaomicron GN=lipB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  411 LVPYNEAWS----WQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEE--YLNFD-LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            L+PY EAW     W   +V+ K     + E   + +I+ +H  VYT+G  G E    LN D LK     ++  +RGG++TYHGPGQLV YPI+NL    + L
Sbjct:   10 LIPYAEAWQRQTEWFDTLVRAKA----QGEAYENRIIMCEHPHVYTLGRSGKENNMLLNDDQLKAIQATLFHIDRGGDITYHGPGQLVCYPILNLEEFHLGL 107          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_VIBHB (Octanoyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=lipB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  477 ERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            +R +D PD + +++H+PV+T G  G  E+L   +      V +++RGG+VTYHGPGQLV Y +INLR  K+
Sbjct:   28 QRTDDTPDEVWLVEHNPVFTQGQAGKAEHL---INTGDIPVVQSDRGGQVTYHGPGQLVAYFLINLRRKKL 95          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_CLOK5 (Octanoyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=lipB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  402 YKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYL---NFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            + +L+ Y+E    Q+   K    +I  N D    L++LQH PV T+G  G +  +    ++L      +  T RGG VTYHGPGQLV YPI+NL N + D+H
Sbjct:    9 FHKLISYSEGIEIQQ---KAFDFVIRNNID--GILLLLQHKPVITIGKSGGKNNILASKYELDKYSIDLCHTSRGGNVTYHGPGQLVGYPILNLNNFQKDIH 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_CHRSD (Octanoyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lipB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  417 PYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            PY   W   +     + A      D PD   +++H PV+T G  G  E+L   L      V  T+RGG+VTYHGPGQ+V+YP+I++R  K+
Sbjct:   19 PYVPVWQAMREFTDTRDA------DSPDQFWLVEHDPVFTQGQAGKAEHL---LMPGDIPVVATDRGGQVTYHGPGQVVLYPLIDVRRGKL 100          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_VIBPA (Octanoyltransferase OS=Vibrio parahaemolyticus GN=lipB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  477 ERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            +R E+ PD + +++H+PV+T G  G  E+L   +      V +++RGG+VTYHGPGQLV Y +INLR  K+
Sbjct:   28 QRTEETPDEVWLVEHNPVFTQGQAGKAEHL---INTGDIPVVQSDRGGQVTYHGPGQLVAYFLINLRRKKL 95          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_VARPS (Octanoyltransferase OS=Variovorax paradoxus (strain S110) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  462 KKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLR 677
            K+  +ER  + PD L + +H+PV+T G  G ++++   L      V +T+RGG+VT+HGPGQ+V YP+I+LR
Sbjct:   23 KQFTLERLPETPDALWICEHAPVFTQGIAGRQDHI---LNPGAIPVVQTDRGGQVTFHGPGQVVAYPLIDLR 91          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THEPX (Octanoyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMG-TGGSEEYLNFDLKD--PPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            +VPY E    Q    +  K       +    LI+LQH PVYT+G +GG +E +   L +     ++Y+ ERGG++T+HGPGQ+V YPI NL   + D+H
Sbjct:   11 IVPYMEGKEIQLKAFERVK-----KGETDGILILLQHPPVYTIGVSGGFDENILVPLAELKKKAELYKVERGGKITFHGPGQIVAYPIFNLAKWQKDVH 104          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_SHESW5.849e-1244.29Octanoyltransferase OS=Shewanella sp. (strain W3-1... [more]
LIPB_SHEPC5.849e-1244.29Octanoyltransferase OS=Shewanella putrefaciens (st... [more]
LIPB_PROM05.849e-1238.30Octanoyltransferase OS=Prochlorococcus marinus (st... [more]
LIPB_BACTN5.849e-1240.20Octanoyltransferase OS=Bacteroides thetaiotaomicro... [more]
LIPB_VIBHB9.977e-1245.07Octanoyltransferase OS=Vibrio harveyi (strain ATCC... [more]
LIPB_CLOK59.977e-1239.22Octanoyltransferase OS=Clostridium kluyveri (strai... [more]
LIPB_CHRSD9.977e-1238.46Octanoyltransferase OS=Chromohalobacter salexigens... [more]
LIPB_VIBPA1.303e-1145.07Octanoyltransferase OS=Vibrio parahaemolyticus GN=... [more]
LIPB_VARPS1.702e-1143.06Octanoyltransferase OS=Variovorax paradoxus (strai... [more]
LIPB_THEPX1.702e-1139.39Octanoyltransferase OS=Thermoanaerobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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