CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THEP3 (Octanoyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMG-TGGSEEYLNFDLKD--PPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            +VPY E    Q    +  K       +    LI+LQH PVYT+G +GG +E +   L +     ++Y+ ERGG++T+HGPGQ+V YPI NL   + D+H
Sbjct:   11 IVPYMEGKEIQLKAFERVK-----KGETDGILILLQHPPVYTIGVSGGFDENILVPLAELKKKAELYKVERGGKITFHGPGQIVAYPIFNLAKWQKDVH 104          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_BRASB (Octanoyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  489 DCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            + P+ + +L+H PVYT GT G  E    DL+DP F +  T RGG+VTYHGPGQ V Y +++L+  + D+
Sbjct:   50 EAPELVWLLEHPPVYTSGTSGKPE----DLRDPRFPLVPTGRGGQVTYHGPGQRVAYVMLDLKRRRPDV 114          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHEWM (Octanoyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+   PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV YP+IN++  K+
Sbjct:   30 RDSSSPDQLWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVAYPLINIKRLKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHEFN (Octanoyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+ D  D L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV+YP+I+++ +K+
Sbjct:   30 RDSDSQDELWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVVYPLIDIKRNKL 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_ERWT9 (Octanoyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=lipB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  477 ERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            +RN++ PD + +++H PV+T G  G  E+L   L      V +++RGG+VTYHGPGQ VMY +INL+  ++
Sbjct:   29 QRNDETPDEIWLVEHLPVFTQGQAGKSEHL---LMPGDIPVMQSDRGGQVTYHGPGQQVMYVMINLKRRRV 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHESH (Octanoyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+   PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV YP+IN++  K+
Sbjct:   30 RDASSPDQLWIVEHPPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVAYPLINIKRLKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_LARHH (Octanoyltransferase OS=Laribacter hongkongensis (strain HLHK9) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLR 677
            LV Y   W   +   +       R  + PD L +++H PVYT+G  G  E+L   L+     + +T+RGG++TYHGPGQLV+Y +++LR
Sbjct:    8 LVDYEPTWHAMQAFTET------RTGETPDELWIVEHPPVYTLGLAGKPEHL---LQQTAIPLVKTDRGGQITYHGPGQLVVYLLMDLR 87          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_XANCP (Octanoyltransferase OS=Xanthomonas campestris pv. campestris GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+E   D L V++H+PV+T+G  G  E++    + P  QV   +RGG+VTYHGPGQLV+YP+++LR  K+
Sbjct:   42 RDEHTGDELWVVEHTPVFTLGQAGKPEHVLAPGEIPVLQV---DRGGQVTYHGPGQLVVYPLLDLRRLKI 108          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_XANC8 (Octanoyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+E   D L V++H+PV+T+G  G  E++    + P  QV   +RGG+VTYHGPGQLV+YP+++LR  K+
Sbjct:   42 RDEHTGDELWVVEHTPVFTLGQAGKPEHVLAPGEIPVLQV---DRGGQVTYHGPGQLVVYPLLDLRRLKI 108          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SERP5 (Octanoyltransferase OS=Serratia proteamaculans (strain 568) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R E  PD L ++QH PV+T G  G  E+L   L      V +++RGG+VTYHGPGQ VMY +I+L+ +K+
Sbjct:   33 RTETTPDELWLVQHQPVFTQGQAGKAEHL---LMPGDIPVVQSDRGGQVTYHGPGQQVMYVMIDLKRNKV 99          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_THEP31.702e-1139.39Octanoyltransferase OS=Thermoanaerobacter pseudeth... [more]
LIPB_BRASB1.702e-1146.38Octanoyltransferase OS=Bradyrhizobium sp. (strain ... [more]
LIPB_SHEWM2.223e-1144.29Octanoyltransferase OS=Shewanella woodyi (strain A... [more]
LIPB_SHEFN2.223e-1142.86Octanoyltransferase OS=Shewanella frigidimarina (s... [more]
LIPB_ERWT92.223e-1143.66Octanoyltransferase OS=Erwinia tasmaniensis (strai... [more]
LIPB_SHESH2.903e-1144.29Octanoyltransferase OS=Shewanella sediminis (strai... [more]
LIPB_LARHH2.903e-1138.20Octanoyltransferase OS=Laribacter hongkongensis (s... [more]
LIPB_XANCP4.952e-1147.14Octanoyltransferase OS=Xanthomonas campestris pv. ... [more]
LIPB_XANC84.952e-1147.14Octanoyltransferase OS=Xanthomonas campestris pv. ... [more]
LIPB_SERP54.952e-1147.14Octanoyltransferase OS=Serratia proteamaculans (st... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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