CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SACD2 (Octanoyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+   PD L +++H PV+T G  G  E+L   L      V  T+RGG+VTYHGPGQLV YP+++LR  K+
Sbjct:   31 RDAHTPDELWLVEHPPVFTQGQAGKAEHL---LAPGAIPVVATDRGGQVTYHGPGQLVAYPLLDLRRLKI 97          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_BRASO (Octanoyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            LV Y EA ++      E +A         + + +L+H PVYT GT G  E    DL+DP F    T RGG+VTYHGPGQ V Y +++L+  + D+
Sbjct:   29 LVDYAEATAFM-----EARAAAIAAHQAEELVWLLEHPPVYTSGTSGKPE----DLRDPRFPFIATGRGGQVTYHGPGQRVAYVMLDLKRRRPDV 114          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_AZOSE (Octanoyltransferase OS=Azoarcus sp. (strain EbN1) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINL 674
            R+ D PD + +L+H PVYT+G  G  E+L   L+D    + + +RGG++TYHGPGQLV Y +I+L
Sbjct:   47 RSADTPDEIWLLEHPPVYTLGQAGQPEHL---LRDVGIPLVKIDRGGQITYHGPGQLVAYLLIDL 108          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHEAM (Octanoyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=lipB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R+E+ PD L +++H PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV YP+++++  K+
Sbjct:   30 RDENSPDELWLVEHPPVFTQGQAGKAEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVAYPLLDIKRLKI 96          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_METCA (Octanoyltransferase OS=Methylococcus capsulatus GN=lipB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  477 ERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            +R +D  D L +++H PVYT+G  G   ++  D    P  V RT+RGG+VTYHGPGQLV+Y +++L+  K+
Sbjct:   26 QRADDTADELWLVEHPPVYTLGMNGDPAHI-LDAGGVP--VVRTDRGGQVTYHGPGQLVLYTLVDLQRRKL 93          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_HAHCH (Octanoyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=lipB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            LV Y   W   ++  +++ A      +  D + +LQH PV+T G  G  E++ F    P  QV   +RGG+VTYHGPGQL++Y +++LR  KM
Sbjct:   19 LVSYEPVWRAMQDFTQQRDA------ETTDEVWLLQHEPVFTQGQAGDAEHVLFPGDIPVVQV---DRGGQVTYHGPGQLMVYLLLDLRRLKM 102          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_BRAJA (Octanoyltransferase OS=Bradyrhizobium japonicum GN=lipB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  414 VPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDL 695
            VPY EA +     ++ + A I   E  P+ + +L+H P+YT GT G +     DL DP F  + T RGG++TYHGPGQ V Y +++L+  + D+
Sbjct:   38 VPYPEAVA----AMEARVAAIAAGE-APELVWLLEHPPLYTSGTSGKDS----DLLDPRFPTFATGRGGQLTYHGPGQRVAYIMLDLKRRRPDV 122          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_ACIC1 (Octanoyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=lipB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINL 674
            +VPY EAW+ Q+ +   + A     ++ PDT ++L+H PVYT G    +    F+       V   +RGG +T+HGPGQLV YPI+ L
Sbjct:    9 VVPYEEAWARQRELHALRVA-----DEIPDTCLLLEHPPVYTAGKRTED----FERPTDGTPVIAVDRGGRITWHGPGQLVGYPIVKL 87          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SHEDO (Octanoyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=lipB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  480 RNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKM 689
            R  D  D L +++H+PV+T G  G  E++   L      V + +RGG+VTYHGPGQLV YP+I+++  K+
Sbjct:   41 RGADSQDELWIVEHTPVFTQGQAGKSEHI---LNPGDIPVIQVDRGGQVTYHGPGQLVAYPLIDIKRAKL 107          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_FLAPJ (Octanoyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=lipB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 3
Query:  420 YNEAWSWQKNI------VKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYL-----NFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLH 698
            Y   W +Q+ +      +K +    ER +  P+  + ++H  VYT+G  G    L       + K   F  Y+  RGG++TYHGPGQ+V YPI++L N   D+H
Sbjct:   15 YKATWDYQEQLFQNVLDIKIQNRREERQDQTPNYFLFVEHPHVYTLGKSGDLSNLLLSEKQLEAKGATF--YKINRGGDITYHGPGQIVGYPILDLENFFTDIH 116          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIPB_SACD24.952e-1147.14Octanoyltransferase OS=Saccharophagus degradans (s... [more]
LIPB_BRASO4.952e-1140.00Octanoyltransferase OS=Bradyrhizobium sp. (strain ... [more]
LIPB_AZOSE4.952e-1147.69Octanoyltransferase OS=Azoarcus sp. (strain EbN1) ... [more]
LIPB_SHEAM6.467e-1142.86Octanoyltransferase OS=Shewanella amazonensis (str... [more]
LIPB_METCA6.467e-1145.07Octanoyltransferase OS=Methylococcus capsulatus GN... [more]
LIPB_HAHCH6.467e-1138.71Octanoyltransferase OS=Hahella chejuensis (strain ... [more]
LIPB_BRAJA6.467e-1139.36Octanoyltransferase OS=Bradyrhizobium japonicum GN... [more]
LIPB_ACIC16.467e-1139.77Octanoyltransferase OS=Acidothermus cellulolyticus... [more]
LIPB_SHEDO8.446e-1142.86Octanoyltransferase OS=Shewanella denitrificans (s... [more]
LIPB_FLAPJ8.446e-1133.65Octanoyltransferase OS=Flavobacterium psychrophilu... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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