CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = -3
Query:  395 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 592
            +VLELAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   61 EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = -3
Query:  395 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 592
            +VLELAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   61 EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  KGK     ASQE
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSAKGK-----ASQE 129          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = -3
Query:  404 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG 592
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG 124          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK  G   +ASQE
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTAGG-KNASQE 135          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK       ASQE
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSGKS----AKASQE 130          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A4_VOLCA2.309e-2483.33Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A3_VOLCA2.309e-2483.33Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A1_DEBHA3.015e-2476.71Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]
H2A1_CANAL3.015e-2482.54Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A_MAGGR3.938e-2476.71Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]
H2A3_ARATH3.938e-2485.94Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH5.143e-2485.94Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A2_ARATH5.143e-2485.94Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A1_ARATH5.143e-2485.94Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A1_PICST8.773e-2475.34Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
back to top