CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = -3
Query:  386 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGS 592
            +VLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+GGVLPNI+  LLPKK  +     GS
Sbjct:   75 EVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGS 143          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            +VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK  K
Sbjct:   70 EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEK 131          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +       AS++
Sbjct:   72 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +       AS++
Sbjct:   72 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A1H_HUMAN1.186e-2079.66Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ... [more]
H2A1D_HUMAN1.186e-2079.66Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A_MAIZE1.549e-2071.01Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A_EUPES1.549e-2079.03Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2AL_STRPU1.549e-2077.42Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2AJ_RAT1.549e-2079.66Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE1.549e-2079.66Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]
H2A6_ORYSJ1.549e-2067.12Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI1.549e-2067.12Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A4_RAT1.549e-2079.66Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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