CX288477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20 Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = -3 Query: 377 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 592 +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK + G ++ Sbjct: 75 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 ++LELAGNAA DNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 48 EILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 109
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20 Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 70 EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 ++LELAGNA+RDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK Sbjct: 62 EILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20 Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 ++LELAGN ARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 62 EILELAGNPARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20 Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK Sbjct: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20 Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK Sbjct: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20 Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 71 EVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20 Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK Sbjct: 61 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20 Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 ++LELA NAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK Sbjct: 62 EILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120 The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bpback to top |