CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK RI PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   61 EILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAARDNKK+RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   68 EVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RIVPRH+QLAVRNDEEL+KLLGSV I+ GGVLP+I   LLP K  KGK     ASQE
Sbjct:   62 EILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLPVKT-KGK---AKASQE 130          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAARDNKK+RI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   71 EVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            +VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL  LL  VTIA+GGVLPNI+  LLPKK  K
Sbjct:   71 EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 132          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K +   G ASQ+
Sbjct:   66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K +   G ASQ+
Sbjct:   66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VT A+GGVLPNI+  LLPKK
Sbjct:   69 EVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKK 127          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAARDNKKNRI PRH+ LAVRNDEEL KLL  VTIA GGVLPNI+  LLPK+
Sbjct:   70 EVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = -3
Query:  380 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSAS 592
            +VLELAGNAARDNKKNRI PRH+ LA+RNDEEL +LL  VTIA+GGVLPNI+  LLPKK          AS
Sbjct:   72 EVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A_ASTRU1.004e-1975.81Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2A1_SOLLC1.004e-1979.66Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_CRYNE1.311e-1972.60Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]
H2A7_ARATH1.311e-1977.97Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A4_ARATH1.712e-1977.42Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2AX_TETTH3.814e-1967.12Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AX_TETPY3.814e-1967.12Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A_PETCR4.981e-1977.97Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A1_PEA6.506e-1979.66Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A5_ARATH8.497e-1967.61Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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