CX288477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19 Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 ++LELAGNAARDNKK RI PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK K Sbjct: 61 EILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKK+RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 68 EVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 ++LELAGNAARDNKK+RIVPRH+QLAVRNDEEL+KLLGSV I+ GGVLP+I LLP K KGK ASQE Sbjct: 62 EILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLPVKT-KGK---AKASQE 130
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKK+RI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 71 EVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19 Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 +VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL LL VTIA+GGVLPNI+ LLPKK K Sbjct: 71 EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 132
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19 Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+ LLP K K + G ASQ+ Sbjct: 66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19 Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+ LLP K K + G ASQ+ Sbjct: 66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19 Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL VT A+GGVLPNI+ LLPKK Sbjct: 69 EVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKK 127
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19 Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAARDNKKNRI PRH+ LAVRNDEEL KLL VTIA GGVLPNI+ LLPK+ Sbjct: 70 EVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19 Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = -3 Query: 380 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSAS 592 +VLELAGNAARDNKKNRI PRH+ LA+RNDEEL +LL VTIA+GGVLPNI+ LLPKK AS Sbjct: 72 EVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142 The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bpback to top |