CX288477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4) HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592 ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL VTIA+GGVLPNIH LL KK G KGK Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592 ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL VTIA+GGVLPNIH LL KK G KGK Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_HUMAN (Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY PE=1 SV=4) HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592 ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL VTIA+GGVLPNIH LL KK G KGK Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_CHICK (Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592 ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL VTIA+GGVLPNIH LL KK G KGK Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18 Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = -3 Query: 383 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSA 592 +VLELAGNAA+DNKK RIVPRH+ LA+RND+EL +LL VTIA+GGV+PNI+ LLPKK + G+A Sbjct: 68 EVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKAAEKAEKAGAA 137
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18 Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = -3 Query: 377 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 592 +VLELAGNAA+DNKK+RIVPRH+ LAVRND+EL +LL VTIA+GGV+PNI+ LLPKK + G+ ++ Sbjct: 68 EVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKAAEKAEKAGTKAK 139
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18 Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+ LLP K K Sbjct: 66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18 Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+ LLP K K Sbjct: 66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18 Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAA+DNKK RI+PRH+ LAVRND+EL +LL VTIA+GGV+PNI+ LLPKK Sbjct: 59 EVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18 Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 +VLELAGNAA+DNKK RI+PRH+ LAVRND+EL +LL VTIA+GGV+PNI+ LLPKK Sbjct: 59 EVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117 The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bpback to top |