CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592
            ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL  VTIA+GGVLPNIH  LL KK G KGK
Sbjct:   59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592
            ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL  VTIA+GGVLPNIH  LL KK G KGK
Sbjct:   59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_HUMAN (Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592
            ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL  VTIA+GGVLPNIH  LL KK G KGK
Sbjct:   59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AY_CHICK (Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 592
            ++LELAGNAARDNKK R+ PRHI LAV NDEEL++LL  VTIA+GGVLPNIH  LL KK G KGK
Sbjct:   59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = -3
Query:  383 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSA 592
            +VLELAGNAA+DNKK RIVPRH+ LA+RND+EL +LL  VTIA+GGV+PNI+  LLPKK  +     G+A
Sbjct:   68 EVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKAAEKAEKAGAA 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = -3
Query:  377 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 592
            +VLELAGNAA+DNKK+RIVPRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK  +     G+ ++
Sbjct:   68 EVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKAAEKAEKAGTKAK 139          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K
Sbjct:   66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            +VLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K
Sbjct:   66 EVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAA+DNKK RI+PRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK
Sbjct:   59 EVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAA+DNKK RI+PRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK
Sbjct:   59 EVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2AY_RAT1.110e-1873.85Core histone macro-H2A.1 OS=Rattus norvegicus GN=H... [more]
H2AY_MOUSE1.110e-1873.85Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]
H2AY_HUMAN1.110e-1873.85Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY ... [more]
H2AY_CHICK1.110e-1873.85Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY... [more]
H2A2_WHEAT1.110e-1864.29Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A3_WHEAT1.449e-1862.50Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_TETTH1.893e-1872.58Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY1.893e-1872.58Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2A6_WHEAT2.472e-1872.88Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A5_WHEAT2.472e-1872.88Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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