CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAA+DNKK RI+PRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK
Sbjct:   59 EVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AW_MOUSE (Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = -3 
Query:  395 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGKGD 592
            ++LELAGNAARDNKK RI PRHI LAV NDEEL++LL  VTIA+GGVLP IH  LL KK G KGK +
Sbjct:   59 EILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSE 125
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AW_HUMAN (Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = -3 
Query:  395 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGKGD 592
            ++LELAGNAARDNKK RI PRHI LAV NDEEL++LL  VTIA+GGVLP IH  LL KK G KGK +
Sbjct:   59 EILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSE 125
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNAARDNKKNRI PRH+ LAVRND EL KLL  VTIA GGVLPNI+  LLPK+
Sbjct:   70 EVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKR 128
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNA+RDNKK RI PR + LAVRNDEEL+KLL  VTIA+GGVLPNI Q LL KK
Sbjct:   76 ELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKK 134
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = -3 
Query:  440 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 592
            ++L LAGNAARDNKK+RI+PRH+QLAV     L+KLLG+VTIA GGVLPNI
Sbjct:   17 EILXLAGNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A1_WHEAT2.472e-1872.88Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2AW_MOUSE4.217e-1871.64Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2... [more]
H2AW_HUMAN4.217e-1871.64Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2... [more]
H2A2_PEA4.217e-1877.97Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A_EUGGR2.733e-1774.58Histone H2A OS=Euglena gracilis PE=2 SV=1[more]
H2A_OLILU6.302e-1472.55Histone H2A (Fragment) OS=Olisthodiscus luteus PE=... [more]
H2AZ_SHEEP6.967e-1361.02Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT6.967e-1361.02Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]
H2AZ_PONAB6.967e-1361.02Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3[more]
H2AZ_ONCMY6.967e-1361.02Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
back to top