CX288477 | Citrus Genome Database

Overview


Name	CX288477
Unique Name	CX288477
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	705

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   62 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 119

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3

Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

The following BLAST results are available for this feature:

BLAST of CX288477 vs. ExPASy Swiss-Prot

BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
H2AZ_MOUSE	6.967e-13	61.02	Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2	[more]
H2AZ_HUMAN	6.967e-13	61.02	Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2	[more]
H2AZ_CHICK	6.967e-13	61.02	Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3	[more]
H2AZ_BOVIN	6.967e-13	61.02	Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2	[more]
H2AV_XENTR	6.967e-13	61.02	Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ...	[more]
H2AV_XENLA	6.967e-13	61.02	Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3	[more]
H2AV_STRPU	6.967e-13	61.02	Histone H2A.V (Fragment) OS=Strongylocentrotus pur...	[more]
H2AV_PAGMA	6.967e-13	61.02	Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3	[more]
H2AV_MOUSE	6.967e-13	61.02	Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3	[more]
H2AV_HUMAN	6.967e-13	61.02	Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	C01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA