CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALI-KATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALI-KATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  398 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K KG
Sbjct:   71 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKG 134          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GG +P+IH++L+ KK
Sbjct:   65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGAIPHIHKSLIGKK 122          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  377 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 592
            +VLELAGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+IH+ L+ KK     G  G+  Q
Sbjct:   67 EVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLI-KATIAGGGVIPHIHRYLMNKKGAPVPGKPGAPGQ 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = -3
Query:  404 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG 592
            +VLELAGNAA+D K  RI PRH+QLA+R D+EL  L+   TIA+GGVLP+I++ LL K   KG
Sbjct:   70 EVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHINKALLLKVEKKG 131          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2AV_DROME6.967e-1361.02Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AV_DANRE6.967e-1361.02Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK6.967e-1361.02Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN6.967e-1361.02Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AZL_XENTR1.552e-1261.02Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA1.552e-1261.02Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AZ_PHANO2.027e-1261.54Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AV_RABIT2.027e-1259.32Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AV_CAEEL2.027e-1252.78Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AZ_YEAST2.648e-1260.32Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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