CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   76 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 132          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNAARD K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I++ LL K
Sbjct:   77 EVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLI-QATIAYGGVMPHINKALLLK 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   69 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAYGGVLPHINKALLLK 125          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_PICGU (Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   69 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAYGGVLPHINKALLLK 125          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   69 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAYGGVLPHINKALLLK 125          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K K
Sbjct:   76 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAYGGVLPHINRALLLKVEQKKK 138          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = -3
Query:  383 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSA 592
            +VLELAGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+IH+ LL K   K +    +A
Sbjct:   75 EVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILI-KATIAGGGVIPHIHKALLGKHSTKNRSSAKTA 143          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   76 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K K
Sbjct:   75 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKK 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_MAGGR (Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K K
Sbjct:   74 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKK 136          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2AV1_ARATH5.898e-1260.34Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AZ_YARLI7.703e-1263.79Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_PICST7.703e-1263.79Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_PICGU7.703e-1263.79Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=... [more]
H2AZ_LODEL7.703e-1263.79Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AZ_GIBZE7.703e-1260.94Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AV_TETTH7.703e-1252.86Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AV2_ARATH7.703e-1260.34Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZ_NEUCR1.006e-1160.94Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 S... [more]
H2AZ_MAGGR1.006e-1160.94Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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