CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   69 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAFGGVLPHINKALLLK 125          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K K
Sbjct:   75 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKK 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNAA+D K  RI PRH+QLA+R D+EL  L+   TIA+GGVLP+I++ LL K
Sbjct:   70 EVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHINKALLLK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -3
Query:  419 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 592
            +VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   74 EVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K
Sbjct:   71 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKK 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K
Sbjct:   70 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKK 132          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPOR (Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K
Sbjct:   71 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKK 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPNC (Histone H2A.Z OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K
Sbjct:   71 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKK 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPFU (Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K
Sbjct:   71 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKK 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPCL (Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K
Sbjct:   71 EVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKK 133          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2AZ_DEBHA1.006e-1163.79Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_CHAGB1.006e-1160.94Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 ... [more]
H2AZ_ASHGO1.006e-1162.07Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AV3_ARATH1.006e-1160.34Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AZ_NEOFI1.314e-1160.94Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]
H2AZ_MONAN1.314e-1160.94Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1[more]
H2AZ_ASPOR1.314e-1160.94Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 S... [more]
H2AZ_ASPNC1.314e-1160.94Histone H2A.Z OS=Aspergillus niger (strain CBS 513... [more]
H2AZ_ASPFU1.314e-1160.94Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=... [more]
H2AZ_ASPCL1.314e-1160.94Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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