CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  374 LQVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG-KGDIGSASQE 595
            +++LEL+GNAARDNKK+RIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLP+K  KG KG    ASQE
Sbjct:   64 VEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAKG----ASQE 134          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3
Query:  398 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKPGKG 129          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K  G    ASQE
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKTAGG-KPASQE 135          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K      SASQE
Sbjct:   63 EILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K      SASQE
Sbjct:   63 EILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A_YARLI3.334e-2374.67Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A_PHANO3.334e-2380.30Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A_BOTFB3.334e-2375.34Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2A8_ORYSI3.334e-2382.81Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A7_ORYSJ3.334e-2382.81Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI3.334e-2382.81Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A1_ORYSJ3.334e-2382.81Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI3.334e-2382.81Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A2_CANGA4.354e-2373.97Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A1_CANGA4.354e-2373.97Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
back to top