CX288477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = -3 Query: 410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592 +VLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGV+PNIH LLPKK G Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAG 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = -3 Query: 410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592 +VLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGV+PNIH LLPKK G Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAG 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK K ASQE Sbjct: 63 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT----KASQE 131
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22 Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 +VLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ LLPKK K Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSK 126
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQ LLPKK GK Sbjct: 65 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGQVTIAQGGVMPYIHQNLLPKKSGK 126
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK G+ G + ++ Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKK 134
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K I ASQE Sbjct: 62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSKK-----SIKGASQE 129
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_LODEL (Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K K Sbjct: 62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAK 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22 Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK GK Sbjct: 61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGK 122
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22 Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+ LLPK+ GKGK Sbjct: 63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126 The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bpback to top |