CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = -3 
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK GK
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = -3 
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = -3 
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = -3 
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK   G    G  S +
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = -3 
Query:  407 GSRL*FFQPCNMGNDFMCFNLQVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 655
            GSR+    P  +         ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   40 GSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = -3 
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = -3 
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3 
Query:  410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   61 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = -3 
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQ LLPKK  K
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124
[Close]
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3 
Query:  410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   61 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A2_PSAMI4.814e-2280.65Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A2_ASHGO4.814e-2271.23Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A1_ASHGO4.814e-2271.23Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3[more]
H2AX_XENLA6.287e-2269.86Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2A1_PSAMI1.401e-2163.86Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_STRPU2.389e-2179.03Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AE_PSAMI2.389e-2179.03Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A_PARAN3.120e-2178.69Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_COCIM3.120e-2177.42Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2A3_PSAMI3.120e-2178.69Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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