CX288477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21 Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAK 125
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21 Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = -3 Query: 407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592 ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21 Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 +VLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK K K Sbjct: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21 Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = -3 Query: 371 DFMCFNLQVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 613 +++C ++LELAGNAARDNKK+RI PRHIQLAVRNDEEL+K L VT A+GGVLPNIH LLPK K + G+A+Q++ Sbjct: 57 EYLC--AEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPK---KSQLKAGTANQDY 132
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21 Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 +VLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK K K Sbjct: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21 Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = -3 Query: 416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592 ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK Sbjct: 61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21 Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21 Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3 Query: 410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592 +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK G Sbjct: 73 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21 Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3 Query: 410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592 +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK G Sbjct: 73 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21 Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = -3 Query: 401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592 ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125 The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bpback to top |