CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAK 125          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = -3
Query:  407 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 592
            ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  371 DFMCFNLQVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 613
            +++C   ++LELAGNAARDNKK+RI PRHIQLAVRNDEEL+K L  VT A+GGVLPNIH  LLPK   K +   G+A+Q++
Sbjct:   57 EYLC--AEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPK---KSQLKAGTANQDY 132          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592
            +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   73 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  410 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 592
            +VLELAGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   73 EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A1_XENLA4.075e-2176.56Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_ONCMY5.322e-2179.03Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_SIPNU6.951e-2176.56Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_PLAFA6.951e-2162.96Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A_PLADU6.951e-2176.56Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A4_PSAMI6.951e-2181.36Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A_CAIMO9.078e-2175.00Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2A4_ORYSJ9.078e-2178.69Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI9.078e-2178.69Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A4_CHICK9.078e-2175.00Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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