CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = -3
Query:  401 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 592
            +VLELAGNAARDNKK RI PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTGGDK 126          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK RIVPRH+QLA+RNDEEL KLLG+V I+ GGV+P+I   LLP K  KGK D G  SQE
Sbjct:   67 EILELAGNAARDNKKQRIVPRHLQLAIRNDEELHKLLGNVVISQGGVVPHIAPELLPSKSSKGKKDEG-VSQE 138          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  416 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 592
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A2B_MOUSE9.078e-2181.36Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN9.078e-2181.36Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A_CAEEL1.186e-2078.13Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2A_AGABI1.186e-2069.86Histone H2A OS=Agaricus bisporus PE=2 SV=3[more]
H2AX_MOUSE1.186e-2079.66Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2AX_HUMAN1.186e-2079.66Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2AJ_MACFA1.186e-2079.66Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN1.186e-2079.66Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_CHICK1.186e-2079.66Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1[more]
H2AJ_BOVIN1.186e-2079.66Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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