CX288481

Overview
NameCX288481
Unique NameCX288481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:407..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288481 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 83/251 (33.07%), Postives = 101/251 (40.24%), Query Frame = 3
Query:  126 TGSKSVSSGSPWYGPDRVKYLGPFSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKENQNGRLAMFSMFGFFVQAIVTG 719
            T   + S+G+   G    KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  E ++ RLAM S FG+ VQA+ TG
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTG 260          
BLAST of CX288481 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 62/196 (31.63%), Postives = 81/196 (41.33%), Query Frame = 3
Query:  210 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKENQNGRLAMFSMFGFFVQA 707
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ E ++ RLAM +M  F+ +A
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244          
BLAST of CX288481 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 62/196 (31.63%), Postives = 82/196 (41.84%), Query Frame = 3
Query:  210 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKENQNGRLAMFSMFGFFVQA 707
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ E ++ RLAM +M  F+ +A
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249          
The following BLAST results are available for this feature:
BLAST of CX288481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB29_CHLRE3.831e-1433.07Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4B_SOLLC4.236e-1331.63Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL5.532e-1331.63Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC01020H07SK Veg1 Citrus clementina cDNA clone C01020H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288481 ID=CX288481; Name=CX288481; organism=Citrus clementina; type=EST; length=724bp
GAGGTGATCATTGTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCA
TTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAA
TGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAG
GTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCT
GGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTG
GGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTG
AACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGC
GTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGT
GTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACT
TGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCT
TGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGG
GCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATC
CATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAG
GAAAATCAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGT
TCAGGCCATTGTCACCGGCAGGGA
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