CX288485

Overview
NameCX288485
Unique NameCX288485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_ASPTN (Eukaryotic translation initiation factor 3 subunit B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prt1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.976e-38
Identity = 85/212 (40.09%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGS--ADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNM-ISVYETESFTLIDKKSLKVENVMDFSWSPT----------DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSP 606
            I+D+ TGK +R F     A               WP F+W    +KY A++ +   IS+YE     L+ K S+K++ VMDF WSP           + ++  + PE+G  + PARV ++ +PSKE +R +NLF+VSD K++WQS G Y+ VKVDR++K+KKS  T  E+FR++E+ +P+EV  +D+  D +I FAWEP G RF +I  G++P
Sbjct:  277 IWDIVTGKPLRSFVSHDLAAGPAEAEAQPKKKVQWPAFKWSAD-EKYVARMLQGQSISIYEAPRMNLLGKTSVKIDGVMDFEWSPATVNRDGVKQYEQLLCFWTPEIG--SNPARVGMMSVPSKEIVRTRNLFNVSDVKLHWQSQGTYVCVKVDRHSKSKKSMATNLEIFRVREKGVPVEV--VDSLKDTVINFAWEPNGGRFVLITTGETP 483          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_ASPFU (Eukaryotic translation initiation factor 3 subunit B OS=Aspergillus fumigatus GN=prt1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.976e-38
Identity = 81/205 (39.51%), Postives = 126/205 (61.46%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKG-SADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNM-ISVYETESFTLIDKKSLKVENVMDFSWSPT----------DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 591
            ++D+ TGK +R F                    WP F+W    +KY A++ ++  IS+YE     L+ K S+K++ VMDF WSP           + ++  + PE+G  + PARV+++ +PSKE +R +NLF+VSD K++WQS G Y+ VKVDR++K+KKS  T  E+FR++E+ +P+EV  +D+  D +I FAWEP G+RF +I
Sbjct:  276 VWDIATGKPLRSFVSHDLTAGPAGDAEPKKKVQWPAFKWSAD-EKYVARMLQHQSISIYELPRMNLLGKTSVKIDGVMDFEWSPATVTREGVKQYEQLLCFWTPEIG--SSPARVAMMSVPSKEIVRTRNLFNVSDVKLHWQSQGLYVCVKVDRHSKSKKSMATNLEIFRVREKGVPVEV--VDSLKDTVINFAWEPNGNRFVLI 475          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_ASPFC (Eukaryotic translation initiation factor 3 subunit B OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=prt1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.976e-38
Identity = 81/205 (39.51%), Postives = 126/205 (61.46%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKG-SADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNM-ISVYETESFTLIDKKSLKVENVMDFSWSPT----------DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 591
            ++D+ TGK +R F                    WP F+W    +KY A++ ++  IS+YE     L+ K S+K++ VMDF WSP           + ++  + PE+G  + PARV+++ +PSKE +R +NLF+VSD K++WQS G Y+ VKVDR++K+KKS  T  E+FR++E+ +P+EV  +D+  D +I FAWEP G+RF +I
Sbjct:  276 VWDIATGKPLRSFVSHDLTAGPAGDAEPKKKVQWPAFKWSAD-EKYVARMLQHQSISIYELPRMNLLGKTSVKIDGVMDFEWSPATVTREGVKQYEQLLCFWTPEIG--SSPARVAMMSVPSKEIVRTRNLFNVSDVKLHWQSQGLYVCVKVDRHSKSKKSMATNLEIFRVREKGVPVEV--VDSLKDTVINFAWEPNGNRFVLI 475          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_DEBHA (Eukaryotic translation initiation factor 3 subunit B OS=Debaryomyces hansenii GN=PRT1 PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.193e-38
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 1
Query:  109 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT------------DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 591
            WP+ +W    DKY A+ G   +++YET SF L+DKK +KV++V+DF W+P             + I+S + PE    NQ ARV+L+QIPS++ +R  NLF VSDCKM+W   G +L VKVDR+TK++K+ ++  E F++ E+DIP+E LEL    D +  FAWEP+  RF  I
Sbjct:  310 WPLVKWSHD-DKYCARQGPGALAIYETPSFQLLDKKLVKVDDVVDFEWAPAAVHLSDSKVKEGEYILSYWTPE--SSNQTARVALMQIPSRKVIRTINLFQVSDCKMHWHGEGKFLCVKVDRHTKSRKTFFSNLEFFKVTEKDIPVEKLEL---KDVVFNFAWEPRSERFITI 476          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_CANAL (Eukaryotic translation initiation factor 3 subunit B OS=Candida albicans GN=PRT1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.859e-38
Identity = 87/195 (44.62%), Postives = 119/195 (61.03%), Query Frame = 1
Query:  109 WPVFRWGGGKDKYFAKLGKNMISVYETES-FTLIDKKSLKVENVMDFSWSPTDP------------IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI--------HGDSPRPDISFYS 630
            WP+ +W    DKY A+ G + +++YETES F L+DKK +KV+ + DF W+P               ++S + PE    NQ ARV+L+QIPS+E LR  NLF VSDCKM+WQS+G  L VKVDR+TK+ K+ ++  E F+  ERDIP+E LEL    D ++ FAWEP   RF  I        +   P+  ISFY+
Sbjct:  306 WPLVKWSYD-DKYCARQGPDALAIYETESNFQLLDKKLVKVDGIQDFEWAPAGVKLHNSKAVDGKHVLSYWTPE--STNQTARVALMQIPSREILRTVNLFQVSDCKMHWQSNGKLLCVKVDRHTKSGKTIFSNLEFFKTNERDIPVEKLEL---KDVVVNFAWEPNTERFITISRLDDGNPNPAIPKNTISFYA 494          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_YARLI (Eukaryotic translation initiation factor 3 subunit B OS=Yarrowia lipolytica GN=PRT1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.511e-37
Identity = 84/200 (42.00%), Postives = 123/200 (61.50%), Query Frame = 1
Query:  106 SWPVFRWGGGKDKYFAKL-GKNMISVYETESFTLIDKKSLKVENVMDFSWSP------------TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-------DSPRP----DISFYSM 633
            SWP+ ++    DKY A++     +S+YETE+ +L+DKKS+K   ++DF W+P            T+ ++  + PE+G  NQ ARV L++  +KE LR +NLF+V+DCK++WQ  G +L VKVDR+TK+KKST+T  E FR+ ER +P+EV+EL    D +   AWEP G RF  I         D P P     +SFY++
Sbjct:  297 SWPILKFSPD-DKYAARMIPGEQLSIYETETMSLLDKKSVKAPGIVDFEWAPALVNLEGRQKSATESVLCYWTPEIG--NQTARVVLMKASNKEVLRTRNLFNVADCKIHWQDQGRFLCVKVDRHTKSKKSTFTNLEFFRLCERGVPVEVMEL---KDTVTNMAWEPHGDRFVTISNSDSTTNYDGPLPANRHTLSFYAL 490          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_DICDI (Eukaryotic translation initiation factor 3 subunit B OS=Dictyostelium discoideum GN=eif3b PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 80/202 (39.60%), Postives = 119/202 (58.91%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGK--NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY----TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 600
            ++DVR+GK +R F     E            +WP F+W   KDKY A++ +    I++YET S  L+D K  +V+ + DFSWSPTD  ++ FVP       PA++ LV++PSK+ L +K+++  +D + +WQ+ G YL VK D+     TK +K   T FELFR  E ++PIE  E+      I AF+WEP+G R  +IHG+
Sbjct:  258 VWDVRSGKKLRSFLAPPKE----------QFTWPAFQWSA-KDKYIARIEQLEKGINIYETPSMNLLDDKIFEVKGIKDFSWSPTDLSLAYFVP--ANDPLPAKICLVEMPSKKLLAEKSIWGATDARFHWQNEGAYLCVKTDKVATGKTKKEKIPTTSFELFRTHEPNVPIESFEIQY---AIKAFSWEPRGKRICIIHGE 443          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_ASHGO (Eukaryotic translation initiation factor 3 subunit B OS=Ashbya gossypii GN=PRT1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.189e-27
Identity = 74/228 (32.46%), Postives = 122/228 (53.51%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSLKVENVMDFSWSP----------TDP---IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-----GDSP---RPDISFYS 630
            I+DV TG  ++ F     +             WP+ +W    DK+ A+LG   I+VYETE +F L+  K +K+E+V DFS++P           DP   ++  + PE    NQ  +  L+++P++  LR  NL  V+D   +WQ+  ++L V+VDR+TK++K+ +T  E+  +  R+ P E +E+    D+ + FAWEP   RF +I       D+P   +  +SFY+
Sbjct:  273 IWDVATGVCVKTFALPPQQ----------QLQWPMVKWSFD-DKFCARLGPGAIAVYETEKNFQLLGGKVMKIEDVQDFSFAPKGIKLASNRPNDPPSTVMVYWTPE--SNNQSCKAVLIELPNRRVLRTINLVQVTDVSFHWQNQAEFLCVQVDRHTKSRKTIFTNMEICSLTAREFPFEKVEI---KDRCMRFAWEPNSDRFVIISRSENVNDNPAIAKNVVSFYA 484          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_KLULA (Eukaryotic translation initiation factor 3 subunit B OS=Kluyveromyces lactis GN=PRT1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 66/207 (31.88%), Postives = 114/207 (55.07%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLIDKKSLKVENVMDFSWSP-----------TDP--IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 591
            ++D+ TG +M+ F                   WP+ R+    DKY  +LG N +++Y+ E+ F L+D K  KVE + DFS++P           +DP  +++ + PE    NQ  +  L+ +P+K  ++  NL  VS+  ++W    D++  +VDR+TK+KK+ +T  E+ ++ E +IP+E +E+    D+++  AWEPKG RF  I
Sbjct:  269 VWDLATGFLMKTF----------GIPPNAKLQWPLIRFSYD-DKYCGRLGPNALAIYDIENNFQLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPETN--NQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHEQADFVCFQVDRHTKSKKTFFTNLEICKLNESEIPVEKIEM---KDRVLELAWEPKGTRFVTI 459          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_CANGA (Eukaryotic translation initiation factor 3 subunit B OS=Candida glabrata GN=PRT1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.242e-23
Identity = 59/175 (33.71%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  109 WPVFRWGGGKDKYFAKLGKNMISVYE-TESFTLIDKKSLKVENVMDFSWSPT-------------DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 591
            WP  ++    DKY A+   + ++VY+ T  F+L++  +LKV  + DFS++PT               ++S + PE    N     S+VQ+P    L+  NL  VS+   YW   G+YL   V+R+TK+KK+ ++  ++ ++ E+DIP+E +E+    D+I+   WEP GHRF  I
Sbjct:  292 WPFVKFSYN-DKYCARFVGDRLAVYDCTNKFSLLEAPALKVSGIRDFSFAPTGVELQPFNKNDEPSVLLSYWTPETN--NSACTASVVQVPRGRVLKTVNLVQVSNVTTYWPEGGEYLVFNVERHTKSKKTLFSNLQICKLTEKDIPVEKIEV---KDRIMEVGWEPHGHRFITI 460          
The following BLAST results are available for this feature:
BLAST of CX288485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3B_ASPTN3.976e-3840.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_ASPFU3.976e-3839.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_ASPFC3.976e-3839.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DEBHA5.193e-3845.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_CANAL8.859e-3844.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_YARLI1.511e-3742.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DICDI5.374e-3539.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_ASHGO9.189e-2732.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_KLULA7.779e-2631.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_CANGA1.242e-2333.71Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC01020H11SK Veg1 Citrus clementina cDNA clone C01020H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288485 ID=CX288485; Name=CX288485; organism=Citrus clementina; type=EST; length=638bp
GGTTGTGATAATATCTTTGATGTGAGAACGGGAAAAGTGATGAGAGATTT
TAAAGGAAGTGCTGATGAGTTTGCAGTTGGAGGAACTGGGGGTGTTGCAG
GAGTATCTTGGCCTGTTTTCAGATGGGGAGGCGGAAAAGATAAGTACTTT
GCCAAACTTGGGAAAAATATGATCTCGGTCTATGAAACTGAGTCCTTTAC
CCTTATTGACAAGAAATCCTTGAAGGTCGAGAATGTTATGGACTTCAGTT
GGTCACCAACTGATCCTATCATTTCACTTTTTGTTCCTGAGCTTGGTGGT
GGGAACCAGCCTGCTAGGGTGAGTCTTGTTCAAATTCCTAGTAAAGAGGA
GTTGAGGCAGAAAAATCTTTTCAGTGTTAGTGATTGTAAGATGTACTGGC
AAAGCAGTGGAGACTATCTAGCTGTTAAAGTCGATCGCTATACAAAAACA
AAAAAAAGCACGTACACCGGCTTTGAGCTGTTCCGAATTAAAGAAAGGGA
CATTCCAATTGAGGTTTTGGAGCTTGACAACAAAAATGACAAGATCATTG
CCTTTGCTTGGGAGCCGAAGGGCCATAGGTTTGCTGTTATCCACGGCGAC
AGTCCAAGGCCTGATATTAGTTTTTACTCAATGCGAAC
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