CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 9.314e-55
Identity = 93/133 (69.92%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG Q+GNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK+VPR+++VDLEP VID+VRTG YR LFHPEQLI+GKEDA+NN+ARGHYT+GKE+VD   D+IR++ADNC+GLQGFLVF++
Sbjct:    8 HVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.216e-54
Identity = 89/133 (66.92%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            ++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  FNTFFSETG GK+VPR ++ DLEP V+DEVRTG YR LFHPEQ+I+GKEDA+NN+ARGHYT+GKE++D CLD++R++ADNC+GLQGFLVF++
Sbjct:    8 NVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.030e-53
Identity = 88/133 (66.17%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            ++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     DD F+TFFSETG GK+VPR ++ DLEP V+DEVRTGTYR LFHPE +I+GKEDA+NN+ARGHYT+GKE++D  LD++R +ADNC+GLQGFLVF++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDDGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.345e-53
Identity = 89/133 (66.92%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            ++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GKHVPRA++ DLEP V+DEVRTG YR LFHPE +I+GKEDA+NN+ARGHYT+GKE++D  LD+IR++ADNC GLQGFLVF++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.996e-53
Identity = 94/133 (70.68%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            HIGQAG+Q+GNACWEL+CLEH IQPDG      +    DD+F TFF ET   K+VPRA+ VDLEPTV+DEVRTGTYR LFHPEQLI+GKEDAANN+ARGHYT+GK+ VD+  DRIRKLAD+C+GLQGFL+F++
Sbjct:    8 HIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPS---SDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHS 137          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.913e-53
Identity = 88/133 (66.17%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            ++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP VIDEVRTG YR LFHPE +ISGKEDA+NN+ARGHYT+GKE++D  LD++R++ADNC+GLQGFLVF++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 3.913e-53
Identity = 88/133 (66.17%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            ++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP VIDEVRTG YR LFHPE +ISGKEDA+NN+ARGHYT+GKE++D  LD++R++ADNC+GLQGFLVF++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.675e-53
Identity = 95/139 (68.35%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFN----TFFSETGAGKHV-PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAG+QVGN+CWELYCLEHGI+ DG +P+D+      +  N    TFFSE+  GK V PRA+F+DLEPTVIDE+RTG Y+ LFHPEQLI+GKEDAANN+ARGHYT+GKE++D+C+DRIR+LAD C GLQGFLVF++V
Sbjct:    9 HIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKDLGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGHYTVGKELIDVCVDRIRRLADQCDGLQGFLVFHSV 147          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 8.717e-53
Identity = 87/133 (65.41%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            ++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP V+DEVRTGTYR LFHPE LI+GKEDA+NN+ARGHYT+GKE++D  LD++R++AD+C+GLQGFLVF++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 3.313e-52
Identity = 90/137 (65.69%), Postives = 114/137 (83.21%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGI PDG    +  V   +    D F TFFSETG GK VPR+++VDLEP VID+VRTG Y+ LFHPEQ+++GKEDA+NN+ARGHYT+GKE++D  L+RIR++ADNC+GLQGFLVF++
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHS 144          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA2_SCHPO9.314e-5569.92Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_AJECA1.216e-5466.92Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_MYCGR1.030e-5366.17Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_GIBZE1.345e-5366.92Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA2_CHICK2.996e-5370.68Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_SORMA3.913e-5366.17Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA2_NEUCR3.913e-5366.17Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICDI6.675e-5368.35Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA1_EMENI8.717e-5365.41Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA1_SCHPO3.313e-5265.69Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
back to top