CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 7.380e-52
Identity = 93/129 (72.09%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFL 387
            +GQAG Q+GNACWELY LEHGI+PDG +    T   GG++ F+TFF+ETG+GK VPRAV+VDLEP VIDEVRTG YR+LFHPEQLISGKEDAANN+ARGHYT+G+E++D  LDRIRK++D C GLQGFL
Sbjct:   10 VGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFL 138          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.804e-51
Identity = 87/133 (65.41%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELY +EHG+ PDG++ SD +    DD F+TFFSET +GK+VPR+++VDLEP VIDEVR G YR LFHPE +I+GKEDAA+N+ARGHYTIGKE +D+ +D++R+L DNC GLQGF VF++
Sbjct:    8 HVGQAGVQIGNACWELYTIEHGLSPDGRL-SDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHS 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 5.289e-50
Identity = 90/138 (65.22%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDD-----AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            HIGQAG Q+GN+ WELY LEHG+  DG++  +K    G+D     +F TFF+ETG+GK+VPR++FVDL+P+ IDE+RTG YRQLFHPEQLISGKEDAANN+ARGHYT+GKE+VD  +DR+R+L+DNC+ LQGFLVF++
Sbjct:    9 HIGQAGTQLGNSAWELYLLEHGLGADGRLDPEK----GEDINAGGSFETFFTETGSGKYVPRSIFVDLDPSPIDEIRTGPYRQLFHPEQLISGKEDAANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHS 142          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.907e-50
Identity = 88/130 (67.69%), Postives = 110/130 (84.62%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSD-KTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFL 387
            ++GQAG Q+GNACWELY  EHGI+PDG +        GG++ F+TFFSETG+GK+VPRA++VDLEP VIDEVRTG Y+ LFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+R+++D C GLQGFL
Sbjct:    8 NVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGGEEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFL 137          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.178e-49
Identity = 91/130 (70.00%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFL 387
            ++GQAG Q+GNACWELY LEHGI+PDG +    +   GG++ F+TFF ETG GK VPRA++VDLEP VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYT+G+EI+   LDRIRKLAD C GLQGFL
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFL 137          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.428e-49
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDG--------QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            HIGQAGIQ+G+ACWELYCLEHGIQP+G        Q+ + K +   + +F+TFF ET AGKHVPRA+FVDLEPTVID +RTG +R LFHPEQL+SGKEDAANN+ARG Y++G E++DL L+R RKLA+ C GLQGFL+F +
Sbjct:    8 HIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAK-MEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRS 147          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.847e-49
Identity = 84/133 (63.16%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELY LEHG+ PDG++  D       D+ +TFFSETG GKHVPR ++VDLEP VID+V+ G YR LFHPE +I+GKEDAANN+ARGHYT+GKE++D  +D++R+LADNC+G QG  VF++
Sbjct:    8 HVGQAGVQIGNACWELYTLEHGLSPDGRLMDDSP--SKHDSGSTFFSETGQGKHVPRRLYVDLEPGVIDDVKNGPYRSLFHPETMITGKEDAANNYARGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHS 138          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.847e-49
Identity = 90/101 (89.11%), Postives = 98/101 (97.03%), Query Frame = 1
Query:   97 KTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            +T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGF VF++
Sbjct:    1 ETIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHS 101          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 9.974e-49
Identity = 86/133 (64.66%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG Q+GN+ WELY LEHG+  DG+   D TV G   +++TFF+E+  GK+VPR++FVDL+P+ IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYT+GKE+ +  LDRIRK+ DNC  LQGFLVF++
Sbjct:    9 HLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGHYTVGKEMAENVLDRIRKITDNCHSLQGFLVFHS 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.701e-48
Identity = 88/130 (67.69%), Postives = 108/130 (83.08%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFL 387
            ++GQAG Q+GNACWELY LEHGI+ DG +    +   GG++ F+TFF ETG GK VPRA++VDLEP VIDEVRTG +++LFHPEQLI+GKEDAANN+ARGHYT+G+EIVD   +RIRK+AD C GLQGFL
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFL 137          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA_ASHGO7.380e-5272.09Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBAA_SCHCO2.804e-5165.41Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA2_EMENI5.289e-5065.22Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_CANAL6.907e-5067.69Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA1_YEAST1.178e-4970.00Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBAL3_HUMAN3.428e-4965.25Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBAB_SCHCO5.847e-4963.16Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA1_CHICK5.847e-4989.11Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA1_NEUCR9.974e-4964.66Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA3_YEAST1.701e-4867.69Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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