CX288489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.721e-29 Identity = 57/132 (43.18%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G+ WE+ C EHG+ P G+ D + + N +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL 140
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 8.778e-29 Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G+ WE+ C EHGI P G+ G D + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRY-----AGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 8.778e-29 Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G+ WE+ C EHGI P G+ V + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28 Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI P G+ G D + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28 Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI P G+ G D + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.497e-28 Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI G+ D + + N +++E G+ VPRAV +DLEP +D +R+GTY Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNVLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28 Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI P G+ G D + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28 Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G+ WE+ C EHGI P G+ VG D + N +++E G+ VP AV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28 Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI P G+ G D + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28 Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI P G+ G D + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139 The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 407
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bpback to top |