CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.721e-29
Identity = 57/132 (43.18%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G+  WE+ C EHG+ P G+   D +     +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.778e-29
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G+  WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRY-----AGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.778e-29
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G+  WE+ C EHGI P G+      V    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.497e-28
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D +R+GTY Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNVLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VP AV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRY-----TGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB1_ARATH6.721e-2943.18Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB6_ORYSJ8.778e-2945.19Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_MAIZE8.778e-2945.45Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB6_MAIZE1.146e-2845.19Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]
TBB4_ORYSJ1.146e-2845.19Tubulin beta-4 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_LUPAL1.497e-2843.94Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB_HORVU1.956e-2845.19Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2... [more]
TBB8_MAIZE1.956e-2845.19Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB2_WHEAT1.956e-2845.19Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2... [more]
TBB2_ELEIN1.956e-2845.19Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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