CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_CAEEL (Tubulin beta-1 chain OS=Caenorhabditis elegans GN=mec-7 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.688e-27
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G+  WE+   EHGI P GQ   D  +    +  N +++E G+ K+VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++   LQGF
Sbjct:   10 GQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G+  WE+   EHG+ P G    D  +    +  N +F E   G++VPRAV +DLEP  +D VR G Y Q+F P+  I G+  A NN+A+GHYT G E++D  LD  RK A++C  LQGF + +++
Sbjct:   10 GQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQL--ERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EHGI P G    D  +    +  N +++E   GK+VPRAV VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHGIDPSGTYHGDNELQL--ERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+   EHG+ P G+   D  +    +  N +F+E   G++VPRA+ VDLEP  +D VR G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK ++ C  LQGF + +++
Sbjct:   10 GQCGNQIGAKFWEVISDEHGVDPSGEYRGDSELQ--IERINVYFNEAAGGRYVPRAILVDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKRSEACDCLQGFQICHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EHGI P G    D  +    +  N +++E   GK+VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y  +F P+  + G+  A NN A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVCAEHGIDATGRYGGDSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G+  WE+   EHGI P GQ   D  +    +  N +++E G+ K+VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++   LQGF
Sbjct:   10 GQCGNQIGSKFWEVISDEHGIDPTGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+   EHGI P G    D  +    +  N +F+E   G++VPRA+ +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A++C  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQL--ERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+ C EHG+ P G      T     +  N +F+E   G+HVPRAV +DLEP  +D +R+G    +F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVICGEHGVDPTGTYTG--TSPQQLERINVYFNEASGGRHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G+  WE+   EHGI P G    D  +    +  N +F+E   G++VPRA+ +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E++D  LD +RK A++C  LQGF
Sbjct:   10 GQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQL--ERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGF 133          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB1_CAEEL3.688e-2746.83Tubulin beta-1 chain OS=Caenorhabditis elegans GN=... [more]
TBB_TRYCR4.817e-2743.18Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB_PSEAM4.817e-2746.03Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB_GIALA4.817e-2741.67Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]
TBB1_MANSE4.817e-2745.24Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1[more]
TBB1_MAIZE4.817e-2743.18Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB1_CAEBR4.817e-2746.83Tubulin beta-1 chain OS=Caenorhabditis briggsae GN... [more]
TBB_CHLRE6.291e-2743.18Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB8_ORYSJ6.291e-2743.18Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_ECTVR6.291e-2744.44Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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