CX288489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_CAEEL (Tubulin beta-1 chain OS=Caenorhabditis elegans GN=mec-7 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 3.688e-27 Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G+ WE+ EHGI P GQ D + + N +++E G+ K+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD LD +RK A++ LQGF Sbjct: 10 GQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27 Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G+ WE+ EHG+ P G D + + N +F E G++VPRAV +DLEP +D VR G Y Q+F P+ I G+ A NN+A+GHYT G E++D LD RK A++C LQGF + +++ Sbjct: 10 GQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQL--ERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27 Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G WE+ EHGI P G D + + N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A++C LQGF Sbjct: 10 GQCGNQIGAKFWEVISDEHGIDPSGTYHGDNELQL--ERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3) HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27 Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ EHG+ P G+ D + + N +F+E G++VPRA+ VDLEP +D VR G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK ++ C LQGF + +++ Sbjct: 10 GQCGNQIGAKFWEVISDEHGVDPSGEYRGDSELQ--IERINVYFNEAAGGRYVPRAILVDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKRSEACDCLQGFQICHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27 Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G WE+ EHGI P G D + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A++C LQGF Sbjct: 10 GQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27 Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHGI G+ D + + N +++E G+ VPRAV +DLEP +D VR+G Y +F P+ + G+ A NN A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDATGRYGGDSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27 Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G+ WE+ EHGI P GQ D + + N +++E G+ K+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD LD +RK A++ LQGF Sbjct: 10 GQCGNQIGSKFWEVISDEHGIDPTGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ EHGI P G D + + N +F+E G++VPRA+ +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A++C LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQL--ERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27 Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ C EHG+ P G T + N +F+E G+HVPRAV +DLEP +D +R+G +F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVICGEHGVDPTGTYTG--TSPQQLERINVYFNEASGGRHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27 Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G+ WE+ EHGI P G D + + N +F+E G++VPRA+ +DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E++D LD +RK A++C LQGF Sbjct: 10 GQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQL--ERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGF 133 The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 407
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bpback to top |