CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:134..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB3_DROME (Tubulin beta-3 chain OS=Drosophila melanogaster GN=betaTub60D PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.510e-24
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGA------GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EHGI  +G    D  +    +  + +++E  A      GK+VPRA+ +DLEP  ++ VR+G Y QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK  +NC  LQGF
Sbjct:   10 GQCGNQIGAKFWEIISEEHGIDSNGIYVGDSDLQL--ERVSVYYNEASAVTRSSGGKYVPRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQSGAGNNWAKGHYTEGAELVDNVLDVVRKECENCDCLQGF 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EHGI   GQ       G  D   +  N +++ETG GK+VPRAV VDL+P  +D ++ G    LF P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+    LQGF
Sbjct:   10 GQCGNQIGTKFWEVVSEEHGIDGTGQY-----TGTSDLQLERINVYYNETGTGKYVPRAVLVDLKPGTMDVIQGGPLGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRKEAEGTDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB8_PANTR (Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            IGQ G Q+G   WE+   EH I   G    D  +    +  N +++E   G++VPRAV VDLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D +RK A++C  LQGF
Sbjct:    9 IGQCGNQIGAKFWEVISDEHAINSAGTYHGDSHLQL--ERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            IGQ G Q+G   WE+   EH I   G    D  +    +  N +++E   G++VPRAV VDLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D +RK A++C  LQGF
Sbjct:    9 IGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EH I   G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK ++ C  LQGF
Sbjct:   10 GQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQL--ERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EH I   G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK ++ C  LQGF
Sbjct:   10 GQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQL--ERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++
Sbjct:   10 GQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++
Sbjct:   10 GQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.502e-24
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G QVG A W+    EHG+  DG    SD+      +  + +F+E    K+VPRAV VDLEP  +D +R+G     F P+ ++ G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++
Sbjct:   10 GQCGNQVGTAFWQTIHGEHGLDQDGVFRGSDEQQS---ERLSVYFTEAAKQKYVPRAVLVDLEPATMDAIRSGPLGDFFRPDNMVYGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDSLQGFQITHSL 139          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB3_DROME6.510e-2442.42Tubulin beta-3 chain OS=Drosophila melanogaster GN... [more]
TBB_USTVI8.502e-2444.19Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB_PESMI8.502e-2440.91Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB8_PANTR8.502e-2442.52Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 P... [more]
TBB8_HUMAN8.502e-2442.52Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBB2_DROME8.502e-2442.06Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]
TBB2_DROHY8.502e-2442.06Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu... [more]
TBB2_COLGR8.502e-2440.91Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_COLGL8.502e-2440.91Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB1_COLGR8.502e-2441.35Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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