CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:134..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+   EHGI   G     SD  +    D    +++E   G++VPRAV VDLEP V+D ++ G +  L+ P+  ++G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF V +++
Sbjct:   10 GQCGNQIGAKFWEVISEEHGIDSSGAYNGTSDLQL----DRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G QVG   WE+   EHGI   G    D  +    +  N +++E    K+VPRAV VDLEP V+D +R  +   +F P+     +  A NN+A+GHYT G E+V+  +D +RK A+NC  LQGF + +++
Sbjct:    9 VGQCGNQVGAKFWEVVSEEHGIDSAGTYKGDTDLQL--ERINVYYNEVAGSKYVPRAVLVDLEPGVLDSIRASSIGSMFRPDNFTHAQSGAGNNWAKGHYTEGAELVESVVDVVRKEAENCDCLQGFQICHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G   WE+   EH I   G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK ++ C  LQGF
Sbjct:   10 GQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQL--ERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGRFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G Q+G   WE+   EHGI+ DG       +    +  + +++E G+ K+VPRAV VDLEP  +D VR+G    LF P+  I G+  A NN+A+GHYT G E+VD  LD +RK A+    LQGF + +++
Sbjct:   10 GQCGNQIGAKFWEVVSDEHGIERDGLYKGTNDMQL--ERISVYYNEIGSNKYVPRAVLVDLEPGTMDSVRSGPLGGLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G QVG A W     EHG+   G      T     +  N +F+E   GK+VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D  LD +R+ A+ C  LQGF
Sbjct:   10 GQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAF---NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G QVG   WE    EHGI   G+      VG  D+     N +++E  + K+VPRAV +DLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E++D  +D +RK A++   LQGF + +++
Sbjct:   10 GQCGNQVGCKFWETISGEHGIDQSGRY-----VGTSDNQLERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAF---NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G QVG   WE    EHGI   G     K VG  D+     N +++E  + K+VPRAV +DLEP  +D VR G +  LF P+  + G+  A NN+A+GHYT G E++D  +D +RK A++   LQGF + +++
Sbjct:   10 GQCGNQVGCKFWETISGEHGIDQTG-----KYVGTSDNQLERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGDLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G QVG   WE    EHGI   G+      VG  D   +  N +++E  + K+VPRAV +DLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E++D  +D +RK A++   LQGF + +++
Sbjct:   10 GQCGNQVGCKFWETISGEHGIDQTGRY-----VGTSDNQLERINVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSL 139          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            GQ G Q+G+  WE    EHGI   G    D  +    +  N +++E   GK+VPRA+ +DLEP  +D VR+G   +LF P+  I G+  A NN+A+GHYT G E+++  LD +RK  + C  LQGF
Sbjct:   10 GQCGNQIGSKFWETISQEHGIDEMGSYHGDSDLQL--ERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGHYTEGAELIEEVLDVVRKECEACDCLQGF 133          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.231e-23
Identity = 50/133 (37.59%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   WE+   EHG+  +G    +K      +  + +++E    + VPRAV VDLEP  +D VR   Y +LF P+  + G+  A NN+A+GHYT G E+++  +D IRK ++ C  LQGF + +++
Sbjct:    9 VGQCGNQIGAKFWEVISHEHGVDTNGTYFGNKD--NQIEKIDVYYNEVSGNRFVPRAVLVDLEPGTMDSVRASNYGRLFRPDNFVFGQSGAGNNWAKGHYTEGAELIESAMDIIRKESEQCECLQGFQIAHSL 139          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB_PORPU1.110e-2341.04Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB2_PHYPO1.110e-2339.85Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB2_DROER1.110e-2342.06Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB1_SUIBO1.110e-2342.42Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_SCHPO1.894e-2343.65Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBB_ENCIN2.474e-2340.74Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_ENCHE2.474e-2341.48Tubulin beta chain OS=Encephalitozoon hellem GN=TU... [more]
TBB_ENCCU2.474e-2340.74Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB3_ECHMU2.474e-2342.06Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBBN_GUITH3.231e-2337.59Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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