CX288489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23 Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ EHGI G SD + D +++E G++VPRAV VDLEP V+D ++ G + L+ P+ ++G+ A NN+A+GHYT G E+VD LD +R+ A+ C LQGF V +++ Sbjct: 10 GQCGNQIGAKFWEVISEEHGIDSSGAYNGTSDLQL----DRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23 Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1 Query: 4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 +GQ G QVG WE+ EHGI G D + + N +++E K+VPRAV VDLEP V+D +R + +F P+ + A NN+A+GHYT G E+V+ +D +RK A+NC LQGF + +++ Sbjct: 9 VGQCGNQVGAKFWEVVSEEHGIDSAGTYKGDTDLQL--ERINVYYNEVAGSKYVPRAVLVDLEPGVLDSIRASSIGSMFRPDNFTHAQSGAGNNWAKGHYTEGAELVESVVDVVRKEAENCDCLQGFQICHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23 Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G WE+ EH I G D + + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK ++ C LQGF Sbjct: 10 GQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQL--ERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGRFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23 Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G Q+G WE+ EHGI+ DG + + + +++E G+ K+VPRAV VDLEP +D VR+G LF P+ I G+ A NN+A+GHYT G E+VD LD +RK A+ LQGF + +++ Sbjct: 10 GQCGNQIGAKFWEVVSDEHGIERDGLYKGTNDMQL--ERISVYYNEIGSNKYVPRAVLVDLEPGTMDSVRSGPLGGLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23 Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G QVG A W EHG+ G T + N +F+E GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D LD +R+ A+ C LQGF Sbjct: 10 GQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23 Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAF---NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G QVG WE EHGI G+ VG D+ N +++E + K+VPRAV +DLEP +D VR G + +LF P+ + G+ A NN+A+GHYT G E++D +D +RK A++ LQGF + +++ Sbjct: 10 GQCGNQVGCKFWETISGEHGIDQSGRY-----VGTSDNQLERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23 Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAF---NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G QVG WE EHGI G K VG D+ N +++E + K+VPRAV +DLEP +D VR G + LF P+ + G+ A NN+A+GHYT G E++D +D +RK A++ LQGF + +++ Sbjct: 10 GQCGNQVGCKFWETISGEHGIDQTG-----KYVGTSDNQLERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGDLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23 Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G QVG WE EHGI G+ VG D + N +++E + K+VPRAV +DLEP +D VR G + +LF P+ + G+ A NN+A+GHYT G E++D +D +RK A++ LQGF + +++ Sbjct: 10 GQCGNQVGCKFWETISGEHGIDQTGRY-----VGTSDNQLERINVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSL 139
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23 Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 GQ G Q+G+ WE EHGI G D + + N +++E GK+VPRA+ +DLEP +D VR+G +LF P+ I G+ A NN+A+GHYT G E+++ LD +RK + C LQGF Sbjct: 10 GQCGNQIGSKFWETISQEHGIDEMGSYHGDSDLQL--ERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGHYTEGAELIEEVLDVVRKECEACDCLQGF 133
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 3.231e-23 Identity = 50/133 (37.59%), Postives = 79/133 (59.40%), Query Frame = 1 Query: 4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 +GQ G Q+G WE+ EHG+ +G +K + + +++E + VPRAV VDLEP +D VR Y +LF P+ + G+ A NN+A+GHYT G E+++ +D IRK ++ C LQGF + +++ Sbjct: 9 VGQCGNQIGAKFWEVISHEHGVDTNGTYFGNKD--NQIEKIDVYYNEVSGNRFVPRAVLVDLEPGTMDSVRASNYGRLFRPDNFVFGQSGAGNNWAKGHYTEGAELIESAMDIIRKESEQCECLQGFQIAHSL 139 The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 407
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bpback to top |