CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:134..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G++  GK + +  +D I + AD    L+GF++ +++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQAG QVG A W +   EHG+   G    +D         + T    +G  K+VPR+V VDLE  V + +R+G   QLF P+   +    A NN+A+G+YT G E++D  LD +R+  +    LQGF + +++
Sbjct:   11 GQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGFQMIHSL 143          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.972e-18
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  C EHGI  +G +    T GG  D  + FF +     ++PRA+ VDLEP VI+ +    Y  L++PE +   K+   A NN+A+G Y+ G+ I +  ++ I + A+    L+GF+V +++
Sbjct:   10 LGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEGG--DRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 9.105e-18
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  CLEHGI PDG +    T   G D  + FF +     ++PRAV +DLEP VI+ + T  Y +L++ E +   K    A NN+A G ++ G+++ +   D + + AD    L+GF++ +++
Sbjct:   10 LGQCGNQIGFEFWKRLCLEHGISPDGVLEDFAT--DGQDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.189e-17
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G+++VD  +D + + AD    L+GF++ +++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQVVDDIMDMVDREADGSDSLEGFVLCHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.553e-17
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGK--EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  C+EHGI P+G +  ++    G+D  + FF +     +VPRAV +DLEP VI +++   Y  L++PE     K  + A NN+A+G Y  G +  +  ++ I + AD    L+GF++ +++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGISPEGIL--EEYALDGEDRKDVFFYQADDEHYVPRAVLIDLEPGVIKQIQNSPYSNLYNPENFFVSKTMDGAGNNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.553e-17
Identity = 45/135 (33.33%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  C+EHGI P+G +  ++    G+D  + FF +     +VPRAV +DLEP VI+ ++   Y  L++PE +   K    A NN+ RG Y   +++ +  ++ I + AD    L+GF++ +++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGIL--EEYAQNGEDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 47/134 (35.07%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G QVG+  W+  CLEHGI PDG +    T G   D  + FF ++   +++PRA+ +DLEP V++ + + TY  L++PE +    +   A NN+A G Y   ++I +  +D I + A+    L+GF + +++
Sbjct:   11 GQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGL--DRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSI 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 46/137 (33.58%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ-LISGKEDAANNFARGHYTIGK--EIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            ++GQ G Q+G+  ++  C EHGI PDG + +++ +   DD  + FF +    ++VPR++ +DLEP V+D +RT  +R  ++PE  +I     A N++A G+YT  K  EI ++    I +  ++C  L+GF   +++
Sbjct:    9 NVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFI---DDRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSI 138          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 44/134 (32.84%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQAG Q+G+  W   C EHGI  +G +    T     D  + FF +     ++PRAV +DLEP V+D +++G Y+ L++PE      +   A NN+A+G Y  G+ + +  ++ I + A+    L+GF++ +++
Sbjct:   11 GQAGNQIGSEFWSQLCAEHGISKEGVLEDWAT--DMTDRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSI 141          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBG1_ARATH5.338e-1835.56Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBB2_SUIBO5.338e-1836.84Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBG_COPC76.972e-1834.81Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG2_DROME9.105e-1834.81Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG2_MAIZE1.189e-1734.07Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG2_EUPCR1.553e-1734.07Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG1_EUPCR1.553e-1733.33Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_SCHJP2.028e-1735.07Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_ENTHI2.028e-1733.58Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_USTVI2.649e-1732.84Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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