CX288489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.753e-13 Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 1 Query: 4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 +GQ G Q+G W+ C EHGI G + + +G D + FF + VPRA+ VDLEP VI + + F E + E A NN+ G Y +GK + + +D I++ A+ C L+ FL+ +++ Sbjct: 9 VGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG---DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSI 134
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.377e-12 Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = 1 Query: 7 GQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 GQ G VG W EH I DG Q+P T DD FF E K PRA+ +D EP+VI +V T+R F P + S A N++A G Y IG D L++I K D+ +GF + ++V Sbjct: 11 GQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTER--DDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSV 142
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11 Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVID-EVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 H+GQ G Q+ A W+ EHGI GQ + + +D + F + +VPRAV VDLEP VI+ +++ + LF+ + + A NN+A G Y G+E+ + +D I + A+N L G L ++V Sbjct: 11 HVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSV 143
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.837e-11 Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1 Query: 4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 +GQ G Q+G W+L EH + G D+A ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G D L++ RK A++C LQ F + +++ Sbjct: 9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSM 147
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11 Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 1 Query: 4 IGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 +GQ G VG W EHGI DG +D +D N FF + ++VPRA+ +DLEP + +V++ ++ LF+P E A N+++ G Y G + D +D I + D+ +GF + ++V Sbjct: 10 VGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSV 143
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11 Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1 Query: 4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402 +GQ G Q+G W+L EH + G DDA ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G + L+++RK A+ C LQ F + +++ Sbjct: 9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSM 147
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 Query: 211 VRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384 VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A++C LQGF Sbjct: 2 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 59 The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 407
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bpback to top |