CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:134..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.753e-13
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+  C EHGI   G +   + +G   D  + FF +      VPRA+ VDLEP VI +  +      F  E +    E   A NN+  G Y +GK + +  +D I++ A+ C  L+ FL+ +++
Sbjct:    9 VGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG---DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSI 134          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.377e-12
Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = 1
Query:    7 GQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            GQ G  VG   W     EH I  DG  Q+P   T    DD    FF E    K  PRA+ +D EP+VI +V   T+R  F P    + S    A N++A G Y IG    D  L++I K  D+    +GF + ++V
Sbjct:   11 GQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTER--DDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSV 142          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVID-EVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            H+GQ G Q+  A W+    EHGI   GQ   +  +   +D  +  F +     +VPRAV VDLEP VI+  +++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  ++V
Sbjct:   11 HVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSV 143          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.837e-11
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+L   EH         +    G  D+A ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    D  L++ RK A++C  LQ F + +++
Sbjct:    9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSM 147          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11
Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G  VG   W     EHGI  DG    +D      +D  N FF +    ++VPRA+ +DLEP  + +V++ ++  LF+P       E   A N+++ G Y  G +  D  +D I +  D+    +GF + ++V
Sbjct:   10 VGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSV 143          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    4 IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            +GQ G Q+G   W+L   EH         +    G  DDA ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK A+ C  LQ F + +++
Sbjct:    9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSM 147          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  211 VRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 384
            VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++C  LQGF
Sbjct:    2 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 59          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBG_ENCCU6.753e-1332.59Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_YEAST4.377e-1236.03Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_CAEEL1.663e-1132.85Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBE_HUMAN2.837e-1129.93Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBG_CANGA4.839e-1130.88Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBE_MOUSE6.320e-1129.93Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBB_HALDI6.320e-1150.00Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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