CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:134..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.525e-68
Identity = 119/134 (88.81%), Postives = 127/134 (94.78%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD TVG   DAFNTFFSET +G+HVPRAVF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT+G+EIVD CL+R+RKLADNCTGLQGFLVFNAV
Sbjct:    8 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.646e-67
Identity = 113/133 (84.96%), Postives = 129/133 (96.99%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDK++GG DD+F+TFFSETG+G+HVPRAV +DLEPTVIDE+RTGTYR LFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIR+LADNCTGLQGFLVF++
Sbjct:    8 HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.646e-67
Identity = 114/133 (85.71%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.646e-67
Identity = 114/133 (85.71%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.646e-67
Identity = 114/133 (85.71%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.646e-67
Identity = 114/133 (85.71%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 3.646e-67
Identity = 114/133 (85.71%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 4.761e-67
Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETGAGKHVPRA+FVDLEPTVIDEV+TG YRQLFHPEQLIS KEDAANNFARGHYT+G+EIVD CLDRIRKLADNCTGLQGFLVFNAV
Sbjct:    8 HIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSLGVARDAFNTFFSETGAGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREIVDPCLDRIRKLADNCTGLQGFLVFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.809e-66
Identity = 111/133 (83.46%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GNACWELYCLEHGIQP GQMPSDK VGG DD+FNTFFSETG+GKHVPRAVFVDLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE +DL LDR+RKL+D CTGLQGFL+F++
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHS 140          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 4.031e-66
Identity = 112/133 (84.21%), Postives = 123/133 (92.48%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            H+GQAG+Q+GN CWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRA+FVDLEPTVIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYTIGKEI+D  LDRIRKLAD CTGLQGFL F++
Sbjct:    8 HVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHS 140          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA1_ARATH2.525e-6888.81Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_HAECO3.646e-6784.96Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA4A_RAT3.646e-6785.71Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE3.646e-6785.71Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA3.646e-6785.71Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN3.646e-6785.71Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN3.646e-6785.71Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA2_ELEIN4.761e-6788.81Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA_ENTDO1.809e-6683.46Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA5_CHICK4.031e-6684.21Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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