CX288491

Overview
NameCX288491
Unique NameCX288491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig619 contig Ccv1_Contig619:24..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR2_HUMAN (Inorganic pyrophosphatase 2, mitochondrial OS=Homo sapiens GN=PPA2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.242e-21
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  221 EECQPETLDYRVFFVNNSGKKVSPWHDIPLQLG-----------------DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPY-NINWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            E  QP + +YR+FF N +G  +SP+HDIPL++                  + +FN +VEIP+ ++AKME+AT E   PIKQ +K GKLRY    +PY    WNYG  PQTWEDP     +    FGDN
Sbjct:   39 ERGQPCSQNYRLFFKNVTGHYISPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYVKDGKLRYVANIFPYKGYIWNYGTLPQTWEDP-HEKDKSTNCFGDN 165          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_CANGA (Inorganic pyrophosphatase OS=Candida glabrata GN=IPP1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLG--DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            TLDY+VF +   GK VSP+HDIPL     + +FN VVEIP+ ++AK+E+  +E   PI QD KKGKLRY    +P++    NYG FPQTWEDP+  + E + A GDN
Sbjct:   13 TLDYKVF-IEEDGKPVSPFHDIPLYADKEENIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNQTHPETK-AVGDN 117          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_NEUCR (Inorganic pyrophosphatase OS=Neurospora crassa GN=ipp-1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  206 QVQITEECQPETLDYRVFFVNNSGKKVSPWHDIPLQLG--DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPY-NINWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            Q  + +   P TL++RV+ +   G  VSP+HDIPL       + N VVEIP+ ++AK E++ +EL  PIKQD KKGKLR+    +P+    WNYG FPQTWEDP+  + E + A GDN
Sbjct:    4 QYSVRKVGAPYTLEHRVY-IEKDGVPVSPFHDIPLYANAEQTILNMVVEIPRWTNAKQEISKEELLNPIKQDTKKGKLRFVRNCFPHKGYLWNYGAFPQTWEDPNSIHPETK-AKGDN 119          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_DEBHA (Inorganic pyrophosphatase OS=Debaryomyces hansenii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  233 PETLDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            P TLDYRVF   N GK VSP+HDIPL   +   V N +VE+P+ ++AK+E++ +E   PI QD KKGKLR+    +P++    NYG FPQTWEDP+  + E + A GDN
Sbjct:   11 PNTLDYRVFIEQN-GKPVSPFHDIPLYANEEKTVLNMIVEVPRWTNAKLEISKEEKLNPILQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNQVHPETK-AKGDN 117          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_ZYGBA (Inorganic pyrophosphatase OS=Zygosaccharomyces bailii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            TLDY++F +   GK VSP+HDIPL   +   +FN VVEIP+ ++AK+E+  +E   PI QD KKGKLRY    +P++    NYG FPQTWEDP+  + E + A GDN
Sbjct:   13 TLDYKLF-IEKDGKPVSPFHDIPLYADEDKQIFNMVVEIPRWTNAKLEITKEENLNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNVVHPETK-AVGDN 117          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_CAEEL (Probable inorganic pyrophosphatase 1 OS=Caenorhabditis elegans GN=pyp-1 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPY-NINWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            +LDYRV+     G  VSPWHDIPL       V+N +VEIP+ ++AKME+AT E ++PIKQD KKG  R+    +P+    WNYG  PQTWEDP+    +  GA GDN
Sbjct:  136 SLDYRVYIKGPQGI-VSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMATKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPDT-GAKGDN 240          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_KLULA (Inorganic pyrophosphatase OS=Kluyveromyces lactis GN=IPP1 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGD--GVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            +LDY+V+ +   GK +S +HDIPL   +  G+FN VVEIP+ ++AK+E+  +E   PI QD KKGKLR+    +P++    NYG FPQTWEDP+ ++ E + A GDN
Sbjct:   13 SLDYKVY-IEKDGKPISAFHDIPLYADEANGIFNMVVEIPRWTNAKLEITKEEPLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNESHPETK-AVGDN 117          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_YEAST (Inorganic pyrophosphatase OS=Saccharomyces cerevisiae GN=IPP1 PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLG--DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            TL+Y+V+ +   GK VS +HDIPL     + +FN VVEIP+ ++AK+E+  +E   PI QD KKGKLR+    +P++    NYG FPQTWEDP+ ++ E + A GDN
Sbjct:   13 TLEYKVY-IEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETK-AVGDN 117          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_DICDI (Inorganic pyrophosphatase OS=Dictyostelium discoideum GN=ppa1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 2
Query:  194 IYNPQVQITEECQPET--LDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            IY+  +  T +   ET  L+YR+FF+ ++ K VS +HD+PL +     + N +VEIP+ ++AK+E+AT E   PIKQD+K GKLR+      +NYG  PQTWE P   +    GA GDN
Sbjct:   17 IYHRNMTYTTKQVGETGSLEYRLFFLKDN-KPVSSFHDVPLWVNKEKQIVNMLVEIPRGTNAKLEIATKEYMNPIKQDVKDGKLRFVHDKYPFNYGALPQTWESPEHTHPST-GAKGDN 133          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_YARLI (Inorganic pyrophosphatase OS=Yarrowia lipolytica GN=IPP1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.864e-18
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  233 PETLDYRVFFVNNSGKKVSPWHDIPLQLG--DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            P TLDY+V+ +   GK VS +HDIPL       + N +VE+P+ ++AKME++ D    PI QD KKGKLR+    +P++    NYG FPQTWEDP+  + E + A GDN
Sbjct:   12 PNTLDYKVY-IEKDGKPVSAFHDIPLYANAEKTILNMIVEVPRWTNAKMEISKDLALNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNHVHPETK-AKGDN 118          
The following BLAST results are available for this feature:
BLAST of CX288491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
IPYR2_HUMAN5.242e-2143.75Inorganic pyrophosphatase 2, mitochondrial OS=Homo... [more]
IPYR_CANGA8.941e-2151.40Inorganic pyrophosphatase OS=Candida glabrata GN=I... [more]
IPYR_NEUCR1.168e-2046.61Inorganic pyrophosphatase OS=Neurospora crassa GN=... [more]
IPYR_DEBHA1.525e-2050.46Inorganic pyrophosphatase OS=Debaryomyces hansenii... [more]
IPYR_ZYGBA2.602e-2050.47Inorganic pyrophosphatase OS=Zygosaccharomyces bai... [more]
IPYR_CAEEL1.686e-1950.47Probable inorganic pyrophosphatase 1 OS=Caenorhabd... [more]
IPYR_KLULA4.906e-1947.66Inorganic pyrophosphatase OS=Kluyveromyces lactis ... [more]
IPYR_YEAST8.369e-1947.66Inorganic pyrophosphatase OS=Saccharomyces cerevis... [more]
IPYR_DICDI1.093e-1843.70Inorganic pyrophosphatase OS=Dictyostelium discoid... [more]
IPYR_YARLI1.864e-1846.79Inorganic pyrophosphatase OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionC02001A06SK IF1 Citrus clementina cDNA clone C02001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288491 ID=CX288491; Name=CX288491; organism=Citrus clementina; type=EST; length=539bp
CACTTTCTCACTCACTCCCACTCACAGTCGCCAGTCAGCAGCCATGGCAG
CCGCAAAAGCGATAAGCCAAACCACTTCTTGCTTGCTGTCCAAAACACCC
TTTGCTCTGAAACACAAATCCCACATCACAAATCTTTGCTTTGGTACCAA
AGGAGTTGCTTTTCCGTCAAAGAGGCTGTTTTCATGTAGGGCTATTTATA
ATCCTCAGGTTCAAATCACAGAGGAGTGCCAGCCTGAAACTCTAGATTAC
AGAGTCTTTTTCGTCAACAATTCTGGCAAAAAGGTTTCTCCCTGGCATGA
CATACCGCTGCAATTGGGTGACGGTGTTTTCAACTTTGTTGTTGAAATAC
CCAAAGAATCAAGTGCAAAGATGGAGGTTGCTACTGATGAGCTATACACC
CCTATTAAACAGGATATAAAGAAGGGGAAGCTTCGATACTACCCATACAA
CATAAATTGGAATTATGGATTGTTTCCACAAACATGGGAAGATCCATCTT
TTGCAAACTCTGAAGTTGAAGGGGCATTTGGGGATAATG
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