CX288495

Overview
NameCX288495
Unique NameCX288495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: CP27A_MOUSE (Sterol 26-hydroxylase, mitochondrial OS=Mus musculus GN=Cyp27a1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.517e-13
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 2
Query:  146 RKAFVEKGQNPNSESEMVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIP 565
            +K   EK Q   ++ +   P G      L  L     E L  QE +    E++ AG DT++ T  WA++HL  + EIQE L+KE+   V    + + +D   MP L AV+KETLR +P           K+TE+ G+  P
Sbjct:  285 KKLIDEKVQELKAQLQETGPDGVRVSGYLHFL--LTNELLSTQETIGTFPELLLAGVDTTSNTLTWALYHLSKSPEIQEALHKEVTGVVPFGKVPQHKDFAHMPLLKAVIKETLRLYPVVPTNSRIITEKETEINGFLFP 422          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C82A2_SOYBN (Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  299 VISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            VI AGT+ S TT  WA   ++ N  + EKL  E+   VGK+  + E D+ K+ YL AVVKETLR +PP          +D  +GGY++  G  +
Sbjct:  315 VIQAGTEASITTLIWATSLILNNPSVLEKLKAELDIQVGKERYICESDLSKLTYLQAVVKETLRLYPPAPLSRPREFEEDCTIGGYTVKKGTRL 408          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C75A4_GENTR (Flavonoid 3',5'-hydroxylase OS=Gentiana triflora GN=CYP75A4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  257 EQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIK-DTELGGYSIPAGVHV 580
            E+L    I  L   + +AGTDTS++  EWA+  L+ N+ +  +   E+   +G+D  + E D+  +PYL A+ KET R+HP     L    I+   ++ GY IP G  +
Sbjct:  292 ERLNTDNIKALLLNLFTAGTDTSSSIIEWALAELLKNRTLLTRAQDEMDRVIGRDRRLLESDIPNLPYLQAICKETFRKHPSTPLNLPRNCIRGHVDVNGYYIPKGTRL 400          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71BY_ARATH (Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=CYP71B37 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  218 YVDSLFGLEPT----GREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPA 568
            +VD L  LE      G  +L    I  +   V+  G  TSA T  WAM  L+ N  + +K+  EI   +G   ++  +D++++ YL  V+ ET R HPP   L+    + + E+ GY+IPA
Sbjct:  267 FVDLLLKLEKEETVLGYGKLTRNHIKAVLMNVLLGGIGTSAITMTWAMTELMRNPRVMKKVQSEIRNQIGGKSMICLDDIDQLHYLKMVINETWRLHPPAPLLVPREVMSEFEINGYTIPA 387          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71BE_ARATH (Cytochrome P450 71B14 OS=Arabidopsis thaliana GN=CYP71B14 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 2
Query:  251 GREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIP 565
            G  QL       +   V+ AG DTS  T  W M HL+ N  + +K   E+   +     + EED+E++ YL  V+KETLR +P    L+   A K  ++GGY IP
Sbjct:  278 GEFQLTRNHTKGILLNVLIAGVDTSGHTVTWVMTHLIKNPRVMKKAQAEVREVIKNKDDITEEDIERLEYLKMVIKETLRINPLVPLLIPREASKYIKIGGYDIP 382          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  242 EPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            + T R +    +++ +  ++  +GT T+A+  EW M  L+ + E  +KL  EI +    +  V E++VEKM YL  V+KE LR HP G  LL     +D +L GY I AG HV
Sbjct:  277 DKTKRFKFDRSDLILILKDMFFSGTATTASQLEWTMTELMRHPECMKKLQDEINSFSTHNLNVTEKEVEKMNYLHCVIKEGLRLHPSGP-LLFRLPSEDVQLKGYDISAGTHV 388          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  212 AAYVDSLFGLEPTGRE--QLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDG-LVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            A +V+ L  +E       ++   +I  +  ++   G  TS+T  EW M  L+ N E  +KL  EI + +   G  +KE++VE M YL AV+KE  R HPP   +L     +D ++ GY I AG  V
Sbjct:  264 ADFVNILLSIEKEKNNGFKVQRNDIKFMILDMFIGGISTSSTLLEWIMTELIRNPECMKKLQNEIRSTIRPHGSYIKEKEVENMRYLKAVIKEVFRVHPPLPLILPRLLTEDVKVKGYDIAAGTEV 389          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71AD_ARATH (Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=CYP71A13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  212 AAYVDSLFGLEPTGRE--QLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDG-LVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            A +VD L  +E       Q+   +I  +  ++   GT T++T  EW M  L+ + +  +KL  EI + +   G  +KE++VE M YL AV+KE LR HP    +L     +D ++ GY+I AG  V
Sbjct:  264 ADFVDILLSIEKDKNSGFQVQRNDIKFMILDMFIGGTSTTSTLLEWTMTELIRSPKSMKKLQDEIRSTIRPHGSYIKEKEVENMKYLKAVIKEVLRLHPSLPMILPRLLSEDVKVKGYNIAAGTEV 389          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: CP1A3_ONCMY (Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1a3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 53/179 (29.61%), Postives = 85/179 (47.49%), Query Frame = 2
Query:   44 DFLPILTPLFRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSES---EMVSPIGAAYVDSLFG--LEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIP 565
            DF+PIL  L  R M+   ++  R              FV+K  + + ES   + +  I  + +D      L+     Q+ +++IV + +++  AG DT +T   WA+ +LV   E QE+L++E+   VG     +  D   +P L+A + E  R      F + H  IKDT L GY IP
Sbjct:  240 DFIPILRYLPNRTMKRFMDINDRFNN-----------FVQKIVSEHYESYDKDNIRDITDSLIDHCEDRKLDENANIQVSDEKIVGIVNDLFGAGFDTISTALSWAVVYLVAYPETQERLHQELKEKVGMIRTPRLSDKINLPLLEAFILEIFRHSSFLPFTIPHCTIKDTSLNGYFIP 407          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: CP17A_ICTPU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 30/106 (28.30%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  263 LGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            L +  ++    ++  AG +T+ T  +W++ +L+ + ++Q K+ +E+ A +G+D   +  D   +PYL+A ++E LR  P    L+ H A+ D  +G Y++  G  V
Sbjct:  290 LTDDHLLMTVGDIFGAGVETTTTVLKWSILYLIHHPQVQRKIQEELDAKIGRDRHPQVNDRGNLPYLEATIREVLRIRPVSPLLIPHVALSDANIGEYTVQKGTRV 395          
The following BLAST results are available for this feature:
BLAST of CX288495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
CP27A_MOUSE8.517e-1333.57Sterol 26-hydroxylase, mitochondrial OS=Mus muscul... [more]
C82A2_SOYBN1.112e-1240.43Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=... [more]
C75A4_GENTR1.112e-1233.94Flavonoid 3',5'-hydroxylase OS=Gentiana triflora G... [more]
C71BY_ARATH1.112e-1233.06Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=C... [more]
C71BE_ARATH1.112e-1236.19Cytochrome P450 71B14 OS=Arabidopsis thaliana GN=C... [more]
C71AR_ARATH1.112e-1237.17Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
C71AI_ARATH1.112e-1234.13Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]
C71AD_ARATH1.112e-1234.13Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=C... [more]
CP1A3_ONCMY1.453e-1229.61Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1... [more]
CP17A_ICTPU1.453e-1228.30Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalu... [more]

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Properties
Property NameValue
Genbank descriptionC02001A10SK IF1 Citrus clementina cDNA clone C02001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288495 ID=CX288495; Name=CX288495; organism=Citrus clementina; type=EST; length=594bp
CATACTAAAAGATGTAATGCTGATAACATCACCACAGCTTCCGGATTTCT
TGCCGATTCTCACTCCATTATTTCGCAGGCAAATGAGAGAAGCAAAGGAG
TTGAGGAAGAGACAAATGGAGTGCTTGGTTCCACTGATAAGGAACAGAAA
AGCTTTTGTAGAGAAAGGCCAAAACCCTAACTCAGAGTCAGAGATGGTGA
GTCCAATTGGTGCTGCTTATGTGGATTCATTGTTTGGGCTGGAGCCAACG
GGGAGAGAGCAGCTGGGGGAACAAGAGATTGTGACATTGTGTTCTGAAGT
GATCAGTGCAGGCACTGACACTAGCGCAACAACGGCCGAATGGGCAATGC
ATCACTTGGTGCTAAACCAGGAGATTCAAGAAAAGTTGTATAAAGAAATT
GTAGCTGCTGTGGGGAAAGATGGGCTTGTTAAAGAAGAAGATGTCGAGAA
AATGCCTTATCTCGATGCTGTCGTGAAGGAAACTCTCCGGCGGCACCCTC
CTGGCCATTTTCTGCTGTCTCACGCTGCCATAAAGGATACTGAGCTTGGC
GGGTACTCCATCCCGGCAGGTGTTCACGTGGAATTCTACACTGC
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