CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.886e-29
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            KN++  S KN  E +G+     + VKVSMDGAPYLRK+DL  Y  Y EL  ALE MF  F++G+Y                +D   GS+FV TYEDKDGDWML+GDVPWEMFI TCKRLRIMK ++A GL
Sbjct:   76 KNNIQ-SKKNESEHEGQG----IYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFK-FSVGEYFE--------------RDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.487e-27
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   65 ALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMF-SCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 400
            A LVKV++DGAPYLRKVDL  ++ Y  L  AL  MF SC  +   G     G      +KL DL+ G+E+V TYEDKDGDWMLVGDVPW+MF+ +CKR+R+MKS++A+ L+PR
Sbjct:   83 AKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEG------TKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.537e-27
Identity = 65/126 (51.59%), Postives = 80/126 (63.49%), Query Frame = 2
Query:   14 ATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            A ++    + +  AG+  L VKVSMDGAPYLRK+DLK Y  Y+EL  ALE MF CF+ G                     ++ S+F +TYEDKDGD MLVGDVP+EMFI TCKRLRIMK ++A GL
Sbjct:   82 AAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAA---------------VNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.313e-27
Identity = 63/114 (55.26%), Postives = 75/114 (65.79%), Query Frame = 2
Query:   50 KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            +A    + VKVSMDGAPYLRK+DL+ Y  Y EL  ALE MF   TIG+Y                ++   GSE+  TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK T+A GL
Sbjct:   87 EADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK-LTIGEYSE--------------REGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.640e-27
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 2
Query:   26 KNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            K  +E +G    + + VKVSM GAPYLRK+DLK Y  Y EL  ALE MF C   G+Y                ++  +GSE+  TYEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++A GL
Sbjct:   88 KKEEESEG----NGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCI-FGEYSE--------------REGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.259e-26
Identity = 66/130 (50.77%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            KN++ T  K+  E  G        VKVSMDGAPYLRK+DL  Y +Y EL  +LE MF  F++G+Y                ++   GS+FV TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++  GL
Sbjct:   74 KNNVQTK-KSESEGQGN------YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEYFE--------------REGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.644e-26
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 2
Query:   20 SSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            S + N   +G+     + VKVSMDGAPYLRKVDLK Y  Y EL  ALE MF    IG+Y                ++   GSE+  TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++A GL
Sbjct:   86 SYRKNSVQEGEG--DGIFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFK-LAIGEYSE--------------REGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.805e-26
Identity = 67/125 (53.60%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   17 TSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            +S KNN+ V          VKVSMDGAPYLRK+DLK Y  Y EL  ALE MF    IG+Y                ++   GS FV TYEDKDGDWMLVGDVPW+MF  +CKRLRIMK +DA  L
Sbjct:   69 SSRKNNNSVS--------YVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVM-IGEYCE--------------REGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            KNSL    K  ++ DG    + + +KVSM GAPYLRK+DLK Y  Y EL  AL+ +F C T G+Y                ++  +GSE+  TYEDKDGDWMLVGDVPW MF+ +CKRLRI+K ++A GL
Sbjct:   92 KNSL--QQKKVEQGDG----TGMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKC-TFGEYSE--------------REGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.392e-25
Identity = 59/103 (57.28%), Postives = 70/103 (67.96%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA 382
            VKVSMDGAPYLRK+DLK Y  Y EL  ALE MF  FT+G+Y                ++   GS FV TYEDKDGDWMLVGDVPW+MF  +C++LRIMK ++A
Sbjct:   77 VKVSMDGAPYLRKIDLKMYKNYPELLKALENMFK-FTVGEYSE--------------REGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA3_ARATH7.886e-2954.62Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA23_ORYSJ1.487e-2755.75Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA31_ORYSJ2.537e-2751.59Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA4_PEA3.313e-2755.26Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
AX22D_PHAAU9.640e-2751.64Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH1.259e-2650.77Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
AX22B_PHAAU1.644e-2652.42Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA2_ARATH2.805e-2653.60Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
AX22E_PHAAU3.663e-2649.23Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA1_ARATH1.392e-2557.28Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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