CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.290e-25
Identity = 71/150 (47.33%), Postives = 87/150 (58.00%), Query Frame = 2
Query:    2 KNSLATSSKNNDE-------VDGKAGSSAL------LVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL-APRAVE 409
            K+  A SS NN +           A SSA       LVKVSMDGAPYLRK+DL+ Y  Y+EL  ALE MF CF                  S   D  + SEF +TY+DKDGD MLVGDVP++MF  TCK+LRIMK ++A GL +PR ++
Sbjct:   94 KSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCF------------------SGAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPRQMK 225          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   56 GSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA--IGLAPR 400
            G+S + VKVSMDGAP+LRK+DL  +  Y +L+ AL+K+F C     YG        M+   K  D    SE V  YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK +DA   GL P+
Sbjct:   83 GASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFGC-----YG--------MVEALKNAD---NSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPK 183          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 62/109 (56.88%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   62 SALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIG 388
            S + +KVSMDGAPYLRK+DL  +  Y EL+ ALEK+F C  I               E  LKD     E V  YEDKDGDWMLVGDVPWEMFI +CKRLRIMK +DA G
Sbjct:   74 SKMYMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDCCGI---------------EEALKDA-ENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   20 SSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            S K N +V G        VKV+MDG    RKVD++ +S Y+ L+  LE+MF       +G  G   RE +   +L D    S+FVLTYEDK+GDWMLVGDVPW MFI + KRLRIM +++A GLAPR  E+
Sbjct:  114 SMKVNPKVQGLG-----FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMF-------FGMTGTTCREKVKPLRLLD--GSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQ 230          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   62 SALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 403
            +A  VKVSMDG PYLRKVD+  Y  Y EL  AL  MF C TIG    +G                   E  + YED DGDWMLVGDVPWEMF+ +CKR+R+M++ +A GL+  A
Sbjct:   44 AAYFVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYGEW-----------------EHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 64/134 (47.76%), Postives = 83/134 (61.94%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDG-KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 400
            K +   S    D+ +G K G  A  VKV+MDG    RKVDL  +  Y+ L+ ALE MF+  +IG   SH          + LK L + +E+ LTYED+DGDWMLVGDVPWEMF+ + KRLRIM+++DA GL  R
Sbjct:  141 KTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNT--------NSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 64/134 (47.76%), Postives = 83/134 (61.94%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDG-KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 400
            K +   S    D+ +G K G  A  VKV+MDG    RKVDL  +  Y+ L+ ALE MF+  +IG   SH          + LK L + +E+ LTYED+DGDWMLVGDVPWEMF+ + KRLRIM+++DA GL  R
Sbjct:  141 KTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNT--------NSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 60/116 (51.72%), Postives = 77/116 (66.38%), Query Frame = 2
Query:   59 SSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA--IGLAPR 400
            +S + VKVSMDGAP+LRK+DL  +  Y +L+ ALEK+F C+ + +                LK++ +G E V  YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK  DA   GL P+
Sbjct:   83 ASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMVE---------------ALKNVENG-EHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPK 182          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 58/107 (54.21%), Postives = 69/107 (64.49%), Query Frame = 2
Query:   68 LLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIG 388
            L VKVSMDGAP+LRK+DL  +  Y +L+ AL+K F C+ I +                LKD    +E V  YEDKDGDWMLVGDVPWEMF  +CKRLRIMK +DA G
Sbjct:   80 LYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGICE---------------ALKDA-ENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 57/125 (45.60%), Postives = 70/125 (56.00%), Query Frame = 2
Query:   14 ATSSKNNDEVDG--KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA 382
            A   K   E D   K     L VKVSMDGAPYLRKVDL+ Y  Y+EL  AL+ +F CF+     S                    + F + YEDKDGD ML GDVPW+MFI +CK+LRIM+ ++A
Sbjct:   89 AAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFSADASAS-------------------AAHFAVAYEDKDGDLMLAGDVPWDMFISSCKKLRIMRGSEA 194          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA12_ORYSJ5.290e-2547.33Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
AUX22_SOYBN1.539e-2453.85Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA6_PEA2.625e-2456.88Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
IAA12_ARATH2.625e-2448.85Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA26_ORYSJ9.976e-2449.12Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA10_ORYSJ9.976e-2447.76Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI9.976e-2447.76Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
AX22A_PHAAU9.976e-2451.72Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
AX22C_PHAAU4.951e-2354.21Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
IAA14_ORYSJ1.881e-2245.60Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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