CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig129 contig Ccv1_Contig129:1..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMK 370
            VKVS+DGA +LRK+DL+ Y  YQ+L+SAL+ +F C+                      D L  SE V  YEDKDGDWML GDVPWEMF+G+CKRLRIMK
Sbjct:   77 VKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCYI------------------NFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMK 157          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVE 409
            +KV+MDG    RKVDL  +S Y+ L+  LE MF     G  G    L  +     +L D    SEFVLTYEDK+GDWMLVGDVPW MFI + KRLR+MK+++A GLA R  E
Sbjct:  132 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVG----LTSQFTKPLRLLD--GSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQE 237          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 57/124 (45.97%), Postives = 73/124 (58.87%), Query Frame = 2
Query:   14 ATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFS-CFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA 382
            AT    +++   +     L VKVSMDGAPYLRKVDLK    Y+EL  AL+ +F+ CF+                 +   D     +F + YEDKDGD MLVGDVPWEMFI +CK+LRIMK ++A
Sbjct:  112 ATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFS-----------------ATASDGCSDGQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA--IGLAPRAVEK 412
            VKVSMDG PYLRK+DL +   Y +L+ AL+K+F    IG     G                   E+V  YEDKDGDWML GDVPW MF+ +CKRLRIMK +DA   GL PR V++
Sbjct:   99 VKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVALKDG----------------DNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE 197          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.220e-21
Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 2
Query:   26 KNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIG 388
            KNN+E     G     VKVSMDG PY+RK+DL + + Y  L + LE +F C  IG           +  E K        E+++ YEDKD DWMLVGDVPW+MF  +CKRLRI+K +DA G
Sbjct:   84 KNNEEASKAIG----YVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG-----------VAKEGKK------CEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.220e-21
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 2
Query:   29 NNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSE-FVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLA 394
            N +  D     +++ VKV+MDG P  RK+DL  +  Y+ LS+ LE+MF    +G       L  +   E+ +K L  GS   VLTYEDK+GDWMLVGDVPW MFIG+ +RLRIMK+++A G A
Sbjct:  124 NKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSR----TLETDGHMETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.080e-21
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            VKV++DGA YLRKVDL  Y  Y +L +ALE MF               + +++  ++ +L    EFV TYEDKDGD MLVGDVPW MF+ +CKR+R+MK+ DAIGL
Sbjct:   89 VKVALDGAAYLRKVDLGMYDCYGQLFTALENMF---------------QGIITICRVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.717e-21
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 2
Query:    8 SLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTI-GQYGSHGALGREMLSESKLKDLLHGS-EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 391
            S+  ++KN+D    K+  +++LVKV+MDG    RKVDL     Y  L   L+ MF  F I          G + + E+    LL GS E+++TY+DKDGDWMLVGDVPW+MF+G+  RLRIMK++   G+
Sbjct:  132 SVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMF--FQIPSPVTRSNTQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.348e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   14 ATSSKNNDEVDGKAGSS-ALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            ++S +N D+     G+   + VK++MDG P  RKVDL  Y  Y +LS+A++K+F     G   +  A        +   +++ G E+ L YED +GD MLVGDVPW+MFI T KRLR++KS+D
Sbjct:  100 SSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFR----GLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.761e-20
Identity = 60/133 (45.11%), Postives = 79/133 (59.40%), Query Frame = 2
Query:   26 KNNDEVDGKAG---SSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKL-KDLLHGSE-FVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKST----DAIGLAP 397
            + NDE D KA        LVK++MDG P  RKVDL+ Y  YQ+LSSA+E++F  F   Q     A   E  +E K+   LL G+  + L YED DGD ML GD+PW++F+ T KRLR+M+ +    D IG  P
Sbjct:  193 RQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSELPHDMIGADP 325          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA5_ARATH3.209e-2253.54Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA13_ARATH5.474e-2251.79Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA24_ORYSJ9.338e-2245.97Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA19_ARATH9.338e-2249.57Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA6_ARATH1.220e-2146.28Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA11_ARATH1.220e-2147.15Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA15_ARATH2.080e-2150.94Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]
IAA10_ARATH2.717e-2143.85Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA2_ORYSJ1.348e-2041.46Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA18_ORYSJ1.761e-2045.11Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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