CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   23 SKNND-EVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGS-EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            +K++D E   +     + VK++MDG P  RKVDL  Y+ Y++LS  ++K+F      Q       G E      +  LL G  EF LTYED +GD MLVGDVPW+MF+ + KRLR++KS++
Sbjct:  136 NKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEE----KPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.648e-18
Identity = 55/138 (39.86%), Postives = 83/138 (60.14%), Query Frame = 2
Query:    2 KNSLATSSKN-------NDEVDGKAGSSAL---LVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKL-KDLLHGS-EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            + +LA+SS +       ND  + K   +     LVK++MDG P  RK+DL  Y+ Y  LSSA++++F  F   Q     A   +  ++ K+   LL GS E+ L YED +GD MLVGDVPW++F+ T KRLR+++S++
Sbjct:  186 RRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.180e-18
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 2
Query:    2 KNSLATSSKNNDEV-DGKAGSSAL------LVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSES-KLKDLLHGS-EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            + +LATSSK + E+ +GK  + A        +K++MDG P  RK+DL  +  Y++LS A++K+F      Q     A  ++   E   +  LL G+ E+ L YED +GD +LVGDVPW MF+ + KRLR++K++D
Sbjct:  149 RRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDG--------KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCF-------TIGQYGSHGALGREMLSESK-LKDLLHGS--EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            + +LA+SS ++    G          G  A  VKV+MDG P  RKVDL  +  Y ELS+A++++F          T+    +  A G     E + +  LL G   E+ L YED +GD MLVGDVPW MFI   +RLR+++S+D
Sbjct:   68 RRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGS-EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            KN    ++    E   + G   + VK++M G P  RKVDL  ++ Y++LS  ++K+F     G   +       +  E  +  LL G+ E+ LTYED +GD MLVGDVPW+MF+ + KRLR++K+++
Sbjct:  131 KNQKCDAAAKTTEPKRQGG---MFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFR----GLLAAQRDFPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   68 LLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 400
            L VK++M+G P  RKV+L  Y+ YQ+LS A++++FS                   +    DL    ++ L YED +GD +LVGDVPWEMF+ T KRL ++K++ A  L+PR
Sbjct:   81 LYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFS-------------------KKDSWDL--NRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPR 170          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   50 KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSE--FVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRI 364
            +  SS + VKV+++G    RK+DLK +  Y  LS AL+ MF  F      S G   R+    ++L+ +  GS+  +VL YED +GD MLVGDVPWE+FI + KRL I
Sbjct:  138 RRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRD----NELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSS---ALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTD 379
            ++SL T++   D   G  G     +L VKV M+G P  RK+DL     Y+ L + L  MF   +I  +  H       +  +K+         VLTYED++GDWM+ GDVPWE+F+ + KRLRI ++ D
Sbjct:   79 RSSLTTATVTADRGGGGGGHGRRRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRA-SITYHHCHRQFAVVGMKTNKV-------HHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKS 373
            VKV+M+G P  RK+DL + + Y++L   L+ MF+   +                ++ +D+ +    VLTY DK+GDWM+VGDVPWEMF+ T +RL+I ++
Sbjct:   87 VKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW---------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRA 171          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   74 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKS 373
            VKV+M+G P  RK+DL + + Y +L + L+ MF+   +                ++ +D+      VLTY DK+GDWM+VGDVPWEMF+ + +RL+I ++
Sbjct:   85 VKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW---------------AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA26_ARATH1.262e-1842.15Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA6_ORYSJ1.648e-1839.86Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA7_ORYSJ8.180e-1839.26Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA16_ORYSJ4.060e-1738.19Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA18_ARATH2.015e-1637.01Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA28_ARATH4.489e-1640.54Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA25_ORYSJ8.465e-1543.93Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA8_ORYSJ1.886e-1437.21Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA20_ARATH1.886e-1439.00Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA30_ARATH7.166e-1438.00Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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