CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 43/107 (40.19%), Postives = 58/107 (54.21%), Query Frame = 2
Query:   50 KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMK 370
            +   ++L VKV M+G P  RK+DL  +S Y+ L   L  MF    I                   +D  H    VLTYEDKDGDWM+VGD+PW+MF+ T +RL+I +
Sbjct:   67 RGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSII----------------CGNRDRKH---HVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   50 KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEF--VLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIM 367
            +A   A  VKV  +G    RKVDL  +S Y EL++ L +MF                +   E K+ +  HG     V+TYED DGDWMLVGDVPW+ F  + KRL+I+
Sbjct:   87 RACGGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPT-------------NDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 2
Query:   68 LLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMK 370
            L VKV M+G P  RK+DL     Y  L   L  MF   T   Y       +++  +         +  VLTYED+DGDWM+VGDVPWE+F+ + K+LRI +
Sbjct:  109 LFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQK--------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 2
Query:   68 LLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMK 370
            L VKV M+G P  RK+DL     Y  L   L  MF   T   Y       +++  +         +  VLTYED+DGDWM+VGDVPWE+F+ + K+LRI +
Sbjct:  109 LFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQK--------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 2
Query:   29 NNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSE--FVLTYEDKDGDWMLVGDVPWE 331
            + D    +  SS + VKV+++G    RK+DLK +  Y  LS AL+ MF  F      S G   R    +++L+ +  GS+  +VL YED +GD MLVGDVPW+
Sbjct:   79 SRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATR----DNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWD 172          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA27_ORYSJ (Auxin-responsive protein IAA27 OS=Oryza sativa subsp. japonica GN=IAA27 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 2
Query:   68 LLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKS 373
            +  KV MDG    RK++L+ +  Y  L   L KM   F      S    G E        D     EF+  YED +GD MLVGDVPWE+F+ + KRL I K+
Sbjct:   27 MFAKVHMDGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCPADYSSTNKGEE--------DCAKSDEFIFLYEDFEGDRMLVGDVPWELFLASAKRLYIAKN 120          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA31_ARATH2.085e-1340.19Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]
IAA9_ORYSJ2.305e-1240.74Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA4_ORYSJ3.329e-1140.59Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI3.329e-1140.59Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA22_ORYSJ3.329e-1139.81Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA27_ORYSJ5.678e-1139.22Auxin-responsive protein IAA27 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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