CX288505

Overview
NameCX288505
Unique NameCX288505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13314 contig Ccv1_Contig13314:889..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:   49 GAGIPRRDASV-----------GQPMPITA---LSTALANAS-PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRSVAQQQANNPAD 351
            G G PR +A+            G P  ++A   L   LA    P+ Q+ ++GE+L+P ++ ++   A K+TGMLLEMD  E+++L E   AL  KV EA+    E L++  QQ    PA+
Sbjct:  627 GRGTPRGNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAVYDEYLKTQGQQPTQQPAE 746
The following BLAST results are available for this feature:
BLAST of CX288505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PABP_NEUCR4.523e-1135.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC02001B09SK IF1 Citrus clementina cDNA clone C02001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288505 ID=CX288505; Name=CX288505; organism=Citrus clementina; type=EST; length=467bp
CCCTTTGACATGGGTGCTGGCAGTATGCTCCCTGTTCCCGTTGACATGGG
TGCTGGCATACCTCGGCGAGATGCGTCTGTTGGACAACCTATGCCGATAA
CGGCTTTGTCTACTGCTCTTGCAAATGCATCACCAGAACAGCAAAGGACG
CTGCTGGGTGAAAGTTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATGC
AGCGGCTAAGGTAACGGGAATGCTCTTGGAGATGGACCAGACAGAGGTTT
TGCATCTTCTTGAGTCACCAGAGGCTTTGAAGGCGAAAGTAGCTGAGGCA
ATGGAGGTTTTGAGGAGTGTTGCTCAGCAGCAGGCTAATAATCCAGCAGA
TCAACTGGCTTCATTGTCCCTGAATGAAAACCTTGTTTCTTGAGCGCGTT
GCTGTCATTGAAGAAGTTTGGATTAGTTGTGGTTTCAAACAATTAAAGTC
TTTGTTTTTGGCATGGA
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