CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICPR (NADH-quinone oxidoreductase subunit B OS=Rickettsia prowazekii GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICM5 (NADH-quinone oxidoreductase subunit B OS=Rickettsia massiliae (strain Mtu5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICFE (NADH-quinone oxidoreductase subunit B OS=Rickettsia felis GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICCN (NADH-quinone oxidoreductase subunit B OS=Rickettsia conorii GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICCK (NADH-quinone oxidoreductase subunit B OS=Rickettsia canadensis (strain McKiel) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDIYIPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICBR (NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain RML369-C) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICB8 (NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain OSU 85-389) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICAH (NADH-quinone oxidoreductase subunit B OS=Rickettsia akari (strain Hartford) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICAE (NADH-quinone oxidoreductase subunit B OS=Rickettsia africae (strain ESF-5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHOCA (NADH-quinone oxidoreductase subunit B OS=Rhodobacter capsulatus GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILQLQ+K+ R
Sbjct:  126 GYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQRKIRR 171          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_RICPR2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICM52.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICFE2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCN2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCK2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICBR2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICB82.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICAH2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICAE2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RHOCA2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Rhodobact... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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