CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHILW (NADH-quinone oxidoreductase subunit B OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  143 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 188          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHIL3 (NADH-quinone oxidoreductase subunit B OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  143 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 188          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_NITHX (NADH-quinone oxidoreductase subunit B OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+D+YVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  151 GYYHYSYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRR 196          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_METRJ (NADH-quinone oxidoreductase subunit B OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  144 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 189          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_DIAST (NADH-quinone oxidoreductase subunit B OS=Diaphorobacter sp. (strain TPSY) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_DELAS (NADH-quinone oxidoreductase subunit B OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_DECAR (NADH-quinone oxidoreductase subunit B OS=Dechloromonas aromatica (strain RCB) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQNKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRASO (NADH-quinone oxidoreductase subunit B OS=Bradyrhizobium sp. (strain ORS278) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRASB (NADH-quinone oxidoreductase subunit B OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  143 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 188          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRAJA (NADH-quinone oxidoreductase subunit B OS=Bradyrhizobium japonicum GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  151 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 196          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_RHILW2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Rhizobium... [more]
NUOB_RHIL32.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Rhizobium... [more]
NUOB_NITHX2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Nitrobact... [more]
NUOB_METRJ2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Methyloba... [more]
NUOB_DIAST2.167e-1986.96NADH-quinone oxidoreductase subunit B OS=Diaphorob... [more]
NUOB_DELAS2.167e-1986.96NADH-quinone oxidoreductase subunit B OS=Delftia a... [more]
NUOB_DECAR2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Dechlorom... [more]
NUOB_BRASO2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Bradyrhiz... [more]
NUOB_BRASB2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Bradyrhiz... [more]
NUOB_BRAJA2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Bradyrhiz... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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