CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_AGRVS (NADH-quinone oxidoreductase subunit B OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  144 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 189          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ACISJ (NADH-quinone oxidoreductase subunit B OS=Acidovorax sp. (strain JS42) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ACIAC (NADH-quinone oxidoreductase subunit B OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHIME (NADH-quinone oxidoreductase subunit B 1 OS=Rhizobium meliloti GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  141 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 186          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RALME (NADH-quinone oxidoreductase subunit B OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGVIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RALEJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia eutropha (strain JMP134) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGVIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RALEH (NADH-quinone oxidoreductase subunit B OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGVIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_PELUB (NADH-quinone oxidoreductase subunit B OS=Pelagibacter ubique GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCD+IVPVDIYVPGCPP+AEALLYGILQLQKK+  +
Sbjct:  122 GYYHYSYSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRNK 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_EHRCR (NADH-quinone oxidoreductase subunit B OS=Ehrlichia chaffeensis (strain Arkansas) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI  LQ+K+NR
Sbjct:  122 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIFCLQQKINR 167          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_CUPTR (NADH-quinone oxidoreductase subunit B OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGVIQLQNKIKR 152          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_AGRVS2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Agrobacte... [more]
NUOB_ACISJ2.167e-1986.96NADH-quinone oxidoreductase subunit B OS=Acidovora... [more]
NUOB_ACIAC2.167e-1986.96NADH-quinone oxidoreductase subunit B OS=Acidovora... [more]
NUOB1_RHIME2.167e-1989.13NADH-quinone oxidoreductase subunit B 1 OS=Rhizobi... [more]
NUOB_RALME2.830e-1986.96NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_RALEJ2.830e-1986.96NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_RALEH2.830e-1986.96NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_PELUB2.830e-1987.23NADH-quinone oxidoreductase subunit B OS=Pelagibac... [more]
NUOB_EHRCR2.830e-1991.30NADH-quinone oxidoreductase subunit B OS=Ehrlichia... [more]
NUOB_CUPTR2.830e-1986.96NADH-quinone oxidoreductase subunit B OS=Cupriavid... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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