CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_AGRRK (NADH-quinone oxidoreductase subunit B OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIY+PGCPPTAEALLYG+L LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPIDIYIPGCPPTAEALLYGVLLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ACIF2 (NADH-quinone oxidoreductase subunit B OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL++G++QLQKK+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIFGLIQLQKKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_ACIF5 (NADH-quinone oxidoreductase subunit B 2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYS+VRGCDRIVPVDIYVPGCPPTAEALL+G++QLQKK+ R
Sbjct:  107 GYYHYSYSIVRGCDRIVPVDIYVPGCPPTAEALLFGLVQLQKKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHIEC (NADH-quinone oxidoreductase subunit B 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  143 GYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 188          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHIE6 (NADH-quinone oxidoreductase subunit B 1 OS=Rhizobium etli (strain CIAT 652) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  143 GYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRR 188          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_ACIF5 (NADH-quinone oxidoreductase subunit B 1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL++G++QLQKK+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIFGLIQLQKKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHILO (NADH-quinone oxidoreductase subunit B OS=Rhizobium loti GN=nuoB PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RALSO (NADH-quinone oxidoreductase subunit B OS=Ralstonia solanacearum GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RALPJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia pickettii (strain 12J) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_NITEC (NADH-quinone oxidoreductase subunit B OS=Nitrosomonas eutropha (strain C91) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIWR 152          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_AGRRK2.830e-1986.96NADH-quinone oxidoreductase subunit B OS=Agrobacte... [more]
NUOB_ACIF22.830e-1986.96NADH-quinone oxidoreductase subunit B OS=Acidithio... [more]
NUOB2_ACIF52.830e-1986.96NADH-quinone oxidoreductase subunit B 2 OS=Acidith... [more]
NUOB1_RHIEC2.830e-1986.96NADH-quinone oxidoreductase subunit B 1 OS=Rhizobi... [more]
NUOB1_RHIE62.830e-1986.96NADH-quinone oxidoreductase subunit B 1 OS=Rhizobi... [more]
NUOB1_ACIF52.830e-1986.96NADH-quinone oxidoreductase subunit B 1 OS=Acidith... [more]
NUOB_RHILO3.697e-1991.30NADH-quinone oxidoreductase subunit B OS=Rhizobium... [more]
NUOB_RALSO3.697e-1986.96NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_RALPJ3.697e-1986.96NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_NITEC3.697e-1991.30NADH-quinone oxidoreductase subunit B OS=Nitrosomo... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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