CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_CAUCR (NADH-quinone oxidoreductase subunit B OS=Caulobacter crescentus GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYY+YSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LQLQKK+ R
Sbjct:  142 GYYYYSYSVVRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_CAUCN (NADH-quinone oxidoreductase subunit B OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYY+YSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LQLQKK+ R
Sbjct:  149 GYYYYSYSVVRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRR 194          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_RHOPS (NADH-quinone oxidoreductase subunit B 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG++ LQKK+ R
Sbjct:  148 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRR 193          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_RHIEC (NADH-quinone oxidoreductase subunit B 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQ+K+ R
Sbjct:  135 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQRKIRR 180          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHOPT (NADH-quinone oxidoreductase subunit B 1 OS=Rhodopseudomonas palustris (strain TIE-1) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG++ LQKK+ R
Sbjct:  147 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRR 192          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHOPA (NADH-quinone oxidoreductase subunit B 1 OS=Rhodopseudomonas palustris GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEALLYG++ LQKK+ R
Sbjct:  147 GYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRR 192          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_WOLWR (NADH-quinone oxidoreductase subunit B OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.828e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 147
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYG+L LQ K+ R R+
Sbjct:  119 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_WOLPM (NADH-quinone oxidoreductase subunit B OS=Wolbachia pipientis wMel GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.828e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 147
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYG+L LQ K+ R R+
Sbjct:  119 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_VESOH (NADH-quinone oxidoreductase subunit B OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.828e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSY+V+RGCDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYAVIRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQDKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_FRAP2 (NADH-quinone oxidoreductase subunit B OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=nuoB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.828e-19
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:  106 GYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_CAUCR3.697e-1986.96NADH-quinone oxidoreductase subunit B OS=Caulobact... [more]
NUOB_CAUCN3.697e-1986.96NADH-quinone oxidoreductase subunit B OS=Caulobact... [more]
NUOB2_RHOPS3.697e-1986.96NADH-quinone oxidoreductase subunit B 2 OS=Rhodops... [more]
NUOB2_RHIEC3.697e-1989.13NADH-quinone oxidoreductase subunit B 2 OS=Rhizobi... [more]
NUOB1_RHOPT3.697e-1986.96NADH-quinone oxidoreductase subunit B 1 OS=Rhodops... [more]
NUOB1_RHOPA3.697e-1986.96NADH-quinone oxidoreductase subunit B 1 OS=Rhodops... [more]
NUOB_WOLWR4.828e-1983.67NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_WOLPM4.828e-1983.67NADH-quinone oxidoreductase subunit B OS=Wolbachia... [more]
NUOB_VESOH4.828e-1986.96NADH-quinone oxidoreductase subunit B OS=Vesicomyo... [more]
NUOB_FRAP24.828e-1985.11NADH-quinone oxidoreductase subunit B OS=Francisel... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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