CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BURA4 (NADH-quinone oxidoreductase subunit B OS=Burkholderia ambifaria (strain MC40-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURPS (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia pseudomallei GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURP6 (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia pseudomallei (strain 668) GN=nuoB2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURP0 (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia pseudomallei (strain 1106a) GN=nuoB2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURMS (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia mallei (strain SAVP1) GN=nuoB2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURMA (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia mallei GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURM9 (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia mallei (strain NCTC 10229) GN=nuoB2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURM7 (NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia mallei (strain NCTC 10247) GN=nuoB2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ+K+  R
Sbjct:  109 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 155
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_BURPS (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP6 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 668) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_BURA46.306e-1984.78NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB2_BURPS6.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB2_BURP66.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB2_BURP06.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB2_BURMS6.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB2_BURMA6.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB2_BURM96.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB2_BURM76.306e-1982.98NADH-quinone oxidoreductase subunit B 2 OS=Burkhol... [more]
NUOB1_BURPS6.306e-1984.78NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP66.306e-1984.78NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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