CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_AZOSB (NADH-quinone oxidoreductase subunit B 2 OS=Azoarcus sp. (strain BH72) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.405e-18
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSV RGCDRI+PVDIY+PGCPPTAEALLYG++QLQ K+ R
Sbjct:  107 GYYHYSYSVARGCDRILPVDIYIPGCPPTAEALLYGLIQLQNKLKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BORPE (NADH-quinone oxidoreductase subunit B OS=Bordetella pertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BORPD (NADH-quinone oxidoreductase subunit B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BORPA (NADH-quinone oxidoreductase subunit B OS=Bordetella parapertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BORBR (NADH-quinone oxidoreductase subunit B OS=Bordetella bronchiseptica GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BORA1 (NADH-quinone oxidoreductase subunit B OS=Bordetella avium (strain 197N) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ANAPZ (NADH-quinone oxidoreductase subunit B OS=Anaplasma phagocytophilum (strain HZ) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+L LQ+K+ R
Sbjct:  121 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGLLCLQQKILR 166          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHOCS (NADH-quinone oxidoreductase subunit B OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSYSVVRG DRIVPVDIYVPGCPPTAEAL+YG+LQLQKK+
Sbjct:  142 GYYHYSYSVVRGVDRIVPVDIYVPGCPPTAEALVYGVLQLQKKI 185          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_POLSQ (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYH SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:  107 GYYHNSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQSKIAR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_POLNS (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter necessarius (strain STIR1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYH SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:  107 GYYHNSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQSKIAR 152          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB2_AZOSB1.405e-1882.61NADH-quinone oxidoreductase subunit B 2 OS=Azoarcu... [more]
NUOB_BORPE2.396e-1886.36NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORPD2.396e-1886.36NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORPA2.396e-1886.36NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORBR2.396e-1886.36NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORA12.396e-1886.36NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_ANAPZ2.396e-1886.96NADH-quinone oxidoreductase subunit B OS=Anaplasma... [more]
NUOB_RHOCS3.129e-1890.91NADH-quinone oxidoreductase subunit B OS=Rhodospir... [more]
NUOB_POLSQ4.087e-1886.96NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_POLNS4.087e-1886.96NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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