CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_COXB1 (NADH-quinone oxidoreductase subunit B OS=Coxiella burnetii (strain CbuK_Q154) GN=nuoB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHY+YSVVRGCDRIVPVD+YVPGCPPTAEAL YGI+QL+ K+  R
Sbjct:  107 GYYHYAYSVVRGCDRIVPVDVYVPGCPPTAEALFYGIMQLRNKIRYR 153          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_BURP1 (Putative NADH-quinone oxidoreductase subunit B 2 OS=Burkholderia pseudomallei (strain 1710b) GN=nuoB2 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.189e-17
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHY YSVVRGCDRIVPVD+YVPGCPPTAEAL+Y ++QLQ+K+  R
Sbjct:  109 GYYHYGYSVVRGCDRIVPVDVYVPGCPPTAEALVYDLMQLQRKVAER 155          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_PARTE (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Paramecium tetraurelia GN=NAD10 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.741e-14
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYHYSY+VV+GCD+I+PVD+  P CPPTAEAL +G+LQLQK +
Sbjct:  103 GYYHYSYAVVKGCDKIIPVDMLCPRCPPTAEALFFGVLQLQKTL 146          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_TRYBB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Trypanosoma brucei brucei GN=NDHK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.716e-12
Identity = 26/44 (59.09%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 132
            GYYH+SY+V+RGC+R +PVD ++PGCPP+AE+L++ +  LQKK+
Sbjct:  147 GYYHFSYAVLRGCERAIPVDFWIPGCPPSAESLVFCLHTLQKKI 190          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_SORC5 (NADH-quinone oxidoreductase subunit B 2 OS=Sorangium cellulosum (strain So ce56) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.172e-11
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            G + Y+YSV +G D+I+PVD+YVPGCPP  EALL G+L++Q+K+   R L
Sbjct:  125 GLFQYAYSVCKGVDQIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERAL 174          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RUBXD (NADH-quinone oxidoreductase subunit B OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=nuoB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.837e-11
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   19 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            YSV+ G DR++PVD+YVPGCPP  EAL++GI+ LQKK+ R + + Y
Sbjct:  115 YSVLMGADRVIPVDVYVPGCPPRPEALIFGIMTLQKKIEREQQVGY 160          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_STRGG (NADH-quinone oxidoreductase subunit B 2 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            G Y  SYSV +G D+I+PVD+YVPGCPP  EALL GIL+LQ+K+ R
Sbjct:  134 GPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 179          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_STRCO (NADH-quinone oxidoreductase subunit B 2 OS=Streptomyces coelicolor GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            G Y  SYSV +G D+I+PVD+YVPGCPP  EALL GIL+LQ+K+ R
Sbjct:  123 GPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_STRAW (NADH-quinone oxidoreductase subunit B 2 OS=Streptomyces avermitilis GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            G Y  SYSV +G D+I+PVD+YVPGCPP  EALL GIL+LQ+K+ R
Sbjct:  119 GPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 164          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_SULSY (NADH-quinone oxidoreductase subunit B OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.254e-11
Identity = 25/44 (56.82%), Postives = 38/44 (86.36%), Query Frame = 1
Query:   16 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 147
            +Y  ++G DRI+PVD+Y+PGCPPT +ALL+GIL+LQKK+  +++
Sbjct:  108 TYPTLQGVDRIIPVDVYIPGCPPTPQALLWGILELQKKIKAKKE 151          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_COXB15.338e-1880.85NADH-quinone oxidoreductase subunit B OS=Coxiella ... [more]
NUOB2_BURP11.189e-1778.72Putative NADH-quinone oxidoreductase subunit B 2 O... [more]
NDUS7_PARTE2.741e-1470.45NADH-ubiquinone oxidoreductase 20 kDa subunit OS=P... [more]
NDUS7_TRYBB5.716e-1259.09NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB2_SORC52.172e-1156.00NADH-quinone oxidoreductase subunit B 2 OS=Sorangi... [more]
NUOB_RUBXD2.837e-1158.70NADH-quinone oxidoreductase subunit B OS=Rubrobact... [more]
NUOB2_STRGG6.320e-1165.22NADH-quinone oxidoreductase subunit B 2 OS=Strepto... [more]
NUOB2_STRCO6.320e-1165.22NADH-quinone oxidoreductase subunit B 2 OS=Strepto... [more]
NUOB2_STRAW6.320e-1165.22NADH-quinone oxidoreductase subunit B 2 OS=Strepto... [more]
NUOB_SULSY8.254e-1156.82NADH-quinone oxidoreductase subunit B OS=Sulfurihy... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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