CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFA (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa GN=nuoB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_VARPS (NADH-quinone oxidoreductase subunit B OS=Variovorax paradoxus (strain S110) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_THISH (NADH-quinone oxidoreductase subunit B OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ K+ R
Sbjct:  107 GYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQNKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_THIDA (NADH-quinone oxidoreductase subunit B OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL++GI+QLQKK+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIFGIIQLQKKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_THICR (NADH-quinone oxidoreductase subunit B OS=Thiomicrospira crunogena (strain XCL-2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_STRMK (NADH-quinone oxidoreductase subunit B OS=Stenotrophomonas maltophilia (strain K279a) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_STRM5 (NADH-quinone oxidoreductase subunit B OS=Stenotrophomonas maltophilia (strain R551-3) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHOFD (NADH-quinone oxidoreductase subunit B OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R + +
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQHKIRRTQTI 156          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_OLICO (NADH-quinone oxidoreductase subunit B OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  147 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 192          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_LARHH (NADH-quinone oxidoreductase subunit B OS=Laribacter hongkongensis (strain HLHK9) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_XYLFA1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_VARPS1.659e-1986.96NADH-quinone oxidoreductase subunit B OS=Variovora... [more]
NUOB_THISH1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Thioalkal... [more]
NUOB_THIDA1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Thiobacil... [more]
NUOB_THICR1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Thiomicro... [more]
NUOB_STRMK1.659e-1982.00NADH-quinone oxidoreductase subunit B OS=Stenotrop... [more]
NUOB_STRM51.659e-1982.00NADH-quinone oxidoreductase subunit B OS=Stenotrop... [more]
NUOB_RHOFD1.659e-1982.00NADH-quinone oxidoreductase subunit B OS=Rhodofera... [more]
NUOB_OLICO1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Oligotrop... [more]
NUOB_LARHH1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Laribacte... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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