CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPT (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain TIE-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = -1 
Query:    2 TYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 241
            T   +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL++ +  GKYEKKVYVLPK
Sbjct:  349 TLKNMKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFQNQ--GKYEKKVYVLPK 425
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = -1 
Query:    2 TYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 241
            T   +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL++ +  GKYEKKVYVLPK
Sbjct:  349 TLKNMKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFQNQ--GKYEKKVYVLPK 425
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PROM4 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = -1 
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L+ Y       IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ + S   Y+ +VY+LPK
Sbjct:  352 IDVASLKPYQWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTQGS--NYDNQVYILPK 432
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURTA (Adenosylhomocysteinase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURPS (Adenosylhomocysteinase OS=Burkholderia pseudomallei GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURP6 (Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 668) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURP1 (Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 1710b) GN=ahcY PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURP0 (Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 1106a) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURMS (Adenosylhomocysteinase OS=Burkholderia mallei (strain SAVP1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
[Close]
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURMA (Adenosylhomocysteinase OS=Burkholderia mallei GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = -1 
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+     G+Y  KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR--GGEYANKVYVLPK 429
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_RHOPT3.704e-1860.00Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RHOPA3.704e-1860.00Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_PROM43.704e-1857.47Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_BURTA3.704e-1864.79Adenosylhomocysteinase OS=Burkholderia thailandens... [more]
SAHH_BURPS3.704e-1864.79Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURP63.704e-1864.79Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURP13.704e-1864.79Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURP03.704e-1864.79Adenosylhomocysteinase OS=Burkholderia pseudomalle... [more]
SAHH_BURMS3.704e-1864.79Adenosylhomocysteinase OS=Burkholderia mallei (str... [more]
SAHH_BURMA3.704e-1864.79Adenosylhomocysteinase OS=Burkholderia mallei GN=a... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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